Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3895 ATGAGCGGCGATCACGGCGGTGGGCAAACTAGTAGGCACAATGGGACCAAACCAAACACAAACTTGAGTCCGTGCCATCCAGCGAACTCAGCGTTCCGACTTGGAGTGGTTGTCTCATTTCGTCGAAGATTCCTTCTCGGAATATTCCACCGCATACCCCGCCGGAATCTCAACGCGCTCGACCAAGTTTGCTCCGAGGCCAAGCCGCCGCCGAAGAAACCCAAGAAAATTCCGGCTCCGGACGCCGCAGCCGTGCAGGCGCCACGGCGGTGCACCCATTGTGGGGTGCACAAGACGCCGCAGTGGCGAACGGGTCCTCTGGGAGCGAAAACGCTGTGCAACGCTTGCGGGGTCCGGTTTAAATCGGGTCGACTTTTACCCGAATACAGACCCGCATGTAGCCCCACTTTCTCCAGCGAATTGCACTCCAACCACCACCGTAAAGTACTGGAGATGCGGCGGAAGAAGGAGGGAACTGCCGGGGTTGACCCGGTCAAGCTGAATGCAAATCGGATGATCATTGGCACTCTTCGGGGCTTTGACCAGTTCATGAATCTTGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAACTGACATAGGGATGGTGGTAATCAGAGGAAATAGTGTAGTCACTGTTGAGGCACTGGAACCTGTGAACAGGACACAGTGA 678 0.5516 MSGDHGGGQTSRHNGTKPNTNLSPCHPANSAFRLGVVVSFRRRFLLGIFHRIPRRNLNALDQVCSEAKPPPKKPKKIPAPDAAAVQAPRRCTHCGVHKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEGTAGVDPVKLNANRMIIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3895 225 MobiDBLite consensus disorder prediction 1 25 - -
Sto6g3895 225 ProSitePatterns GATA-type zinc finger domain. 91 116 IPR000679 GO:0006355|GO:0043565
Sto6g3895 225 CDD ZnF_GATA 90 138 IPR000679 GO:0006355|GO:0043565
Sto6g3895 225 ProSiteProfiles GATA-type zinc finger domain profile. 85 121 IPR000679 GO:0006355|GO:0043565
Sto6g3895 225 Gene3D - 164 221 - -
Sto6g3895 225 Gene3D - 83 160 IPR013088 GO:0006355|GO:0008270
Sto6g3895 225 PANTHER GATA TRANSCRIPTION FACTOR 64 165 - -
Sto6g3895 225 CDD Sm_G 165 219 IPR034098 GO:0000387|GO:0005681
Sto6g3895 225 Pfam GATA zinc finger 91 125 IPR000679 GO:0006355|GO:0043565
Sto6g3895 225 SMART GATA_3 85 139 IPR000679 GO:0006355|GO:0043565
Sto6g3895 225 Pfam LSM domain 165 216 IPR001163 -
Sto6g3895 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 84 147 - -
Sto6g3895 225 SUPERFAMILY Sm-like ribonucleoproteins 165 221 IPR010920 -
Sto6g3895 225 SMART Sm3 148 217 IPR001163 -
Sto6g3895 225 PANTHER GATA TRANSCRIPTION FACTOR 64 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3895 Sto-Chr6 43218618 43223576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3895 63 160 C2C2-Gata Transcription Factor Family AT5G66320 71.845 1.68e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto6g3895 LSM 2.3e-16 CL0527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3895 - - aprc:113869559 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3895 6 43218618 43223576 Sto11g1511 11 14323435 14324523 CCT
Sto6g3895 6 43218618 43223576 Sto11g1511 11 14323435 14324523 ECH
Sto6g3895 6 43218618 43223576 Sto6g3895 6 43218618 43223576 ECH