Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3891 ATGGGACGAGGAAAGATTGAGATAAAATTAATCGAGAACCCCACCAACAGGCAGGTGACCTACTCCAAACGACGCAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTGTGTGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCACTCCTGGCCTTACAACGAAGAAGATGGTGGATCAGTACCAGAAGGCCTTGGGGAATATCGATCTGTGGCGTGCTCACTATGAGAGAATGCTGGAGAATTTGAGAAAACTGAAAGAGATTAACAATAAACTCAGAAAACAGATCAGGAATAGGCTAGGTGCTGATTTGGAGGATTTGAGCTTCGACCAACTGCGCAATCTTGAGGACGAAATAATCAATTCATCTGCCTTGATACGCGTAGATGATGAAGCAACAGTTGGAGTGGCGAATGGTGGGTCCAACCTCTATGCATTCTGCCAGCATCACACTCATCATCTCAATCTTCATCACCAAGAagcggctttagggtttaaaccCCACGATCTTCGCCTTGCTTGA 552 0.4312 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLTTKKMVDQYQKALGNIDLWRAHYERMLENLRKLKEINNKLRKQIRNRLGADLEDLSFDQLRNLEDEIINSSALIRVDDEATVGVANGGSNLYAFCQHHTHHLNLHHQEAALGFKPHDLRLA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3891 183 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Sto6g3891 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 Coils Coil 85 105 - -
Sto6g3891 183 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 137 - -
Sto6g3891 183 PANTHER SERUM RESPONSE FACTOR HOMOLOG 139 183 - -
Sto6g3891 183 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 139 183 - -
Sto6g3891 183 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 137 - -
Sto6g3891 183 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto6g3891 183 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Sto6g3891 183 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Sto6g3891 183 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g3891 183 Pfam K-box region 84 137 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3891 Sto-Chr6 43200441 43201969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3891 1 137 MADS-box Gene Family AT3G54340 62.044 2.19e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto6g3891 K-box 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3891 K09264 - gmx:100791963 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3891 6 43200441 43201969 Sto6g3891 6 43200441 43201969 ECH