Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3876 ATGGCGGGTTTATTCTCATTAGGCGGCGGCGGAGGAGGTGGAGGGAGGGGAGGGAGTAACAACCAAGACGACCAGCCCCACAACCCACCCACCGCAGTTCCCCATCCCGACACCTTTCTTTGGTATAAGAACAATGAAGACGTTTCTTCCTACAGAGGCTTCGAGCTTTGGAACCAGCAGCAACAGCAGGAGCAGCATCTCATCCCACAGGCGCGTCCACTGTTCCACCAAGATCTTTACTCGCCGGCGGTTGCGTTAGGGGTGGGGCCTAGCAGGAGCTCGGATGATCAGTCATCAACGAGATCGGGATTCATGGTGATGCGTTCAGGCGGAGGAGGAGGAAGCGGCGGAATAAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAGGATTGCCCACACATGCGGTGCAGAACTTGCTGCAAGAGCCGAGGATACGATTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTGCCAAGCGTCGGGAGAGGCAACAGCAACAGCAACAGCAACTAAGAGGAGATCAATCCAAGAGGCAGAGAGATGGTAACAATGATAATAGCAACCCATCCTCTTCCGCAGCAGCAGCAGCTCTCGCTACCACTAGCACTCACTTGCAAATGCCTACTACTCACTCCTCATCAGaagGGTTAGATCATGGGAGTTTTCCACCATTGGTTAGCTCATCCGTGGAGTTTCGGTGCGTGCGGGTTAGCTCCATGGACGAGGCTGACGAGCAATATGCATATCAAACGGCCGTCAACATAGGAGGCCATGTATTCCGAGGAATTCTCTACGACCACGGCCCCGATAGTAGTTACATGTCTACCGGAGATACCTCTTCCACTGGTGCCGGCGGAGGAGTCCAACCCTTGAACCTCATTGCCGCCGCTCCCGCTCTACCCACCACCGCTGCTTTGGGTTCATCTACTGCCTCCCTTGTCGATCCTTCTTTGTACGCGGCTCCACTAAACACCTTCATGTCTGGTAGTGGTACGCAATTCTTCCCTCATCCGAGATCTTGA 1026 0.5468 MAGLFSLGGGGGGGGRGGSNNQDDQPHNPPTAVPHPDTFLWYKNNEDVSSYRGFELWNQQQQQEQHLIPQARPLFHQDLYSPAVALGVGPSRSSDDQSSTRSGFMVMRSGGGGGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQQQQQLRGDQSKRQRDGNNDNSNPSSSAAAAALATTSTHLQMPTTHSSSEGLDHGSFPPLVSSSVEFRCVRVSSMDEADEQYAYQTAVNIGGHVFRGILYDHGPDSSYMSTGDTSSTGAGGGVQPLNLIAAAPALPTTAALGSSTASLVDPSLYAAPLNTFMSGSGTQFFPHPRS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3876 341 MobiDBLite consensus disorder prediction 183 198 - -
Sto6g3876 341 MobiDBLite consensus disorder prediction 91 105 - -
Sto6g3876 341 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 339 IPR007818 GO:0003700|GO:0006355
Sto6g3876 341 PANTHER PROTEIN SHORT INTERNODES 1 339 - -
Sto6g3876 341 MobiDBLite consensus disorder prediction 86 110 - -
Sto6g3876 341 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 223 270 IPR006511 -
Sto6g3876 341 MobiDBLite consensus disorder prediction 1 38 - -
Sto6g3876 341 MobiDBLite consensus disorder prediction 160 174 - -
Sto6g3876 341 Pfam Domain of unknown function (DUF702) 117 271 - -
Sto6g3876 341 MobiDBLite consensus disorder prediction 158 198 - -
Sto6g3876 341 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 119 161 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3876 Sto-Chr6 43111754 43113280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3876 1 330 C2H2 Transcription Factor Family AT5G66350 46.459 2.35e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto6g3876 DUF702 2.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3876 - - ahf:112720334 348.977