Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3870 ATGTCAACCACGAAGCCGGAGCAATGGCAGTGGGAAAAAGCTACAGCCGGTGCCGTTGCTGGATTCGCCACCGTCGCCGTCATGCATCCCCTTGACGTTGTCCGAACTAGGTtccaagTCCACGATGGTCGAGTCACTCTTCTTCCGAGTTACAAGAATACTGCTCACGCCATTTTCACCATTGCTCGCTCAGAGGGCTTAAGAGGGTTATATGCAGGCTTTCTTCCTGCAGTTCTTGGGTCAACTATATCATGGGGTCTATACTTCTTTTTCTACGATAAAGCCAAACAAAGGTATGCTAGGAACAAGGATGAGAAGCTGGGCCCAGGATATCATCTGGCTTCGGCTGCTGAAGCAGGAGCTTTGGTTTGCTTATGCACAAATCCTGTTTGGTTGGTAAAGACAAGAATGCAGCTCCAGACTCCTCTGCATCAAACACAACCATACAATGGGCTTTATGATGCATTTAAGACCATAATGAGAGAAGAAGGATTGAGGGCACTGTACAGAGGAATTGTTCCTGGTCTTTTTTTGGTCTCTCATGGTGCAATTCAGTTCACAGCATATGAAGAGCTTAGAAAAGTGATTGTAGATTTGAAGAGTAAGGAAAGTGAAATACATCATCAAAACCCCGATAAACTGTTGAATTCTGCTGACTATGCTGTTCTTGGAGCAACTTCAAAAGTTGCTGCCATTCTTCTAACCTATCCATTTCAGGTTGTACGGTCTCGGTTGCAGCAACGGCCCAGCATTGATGGGATTCCAAGATATATGGATAGTTGGCATGTCATGAAGGAAACTGCACGGTTTGAAGGTGTTCGAGGTTTCTACAAAGGGATTACCCCAAACCTTTTGAAAAATGTTCCTGCTTCTTCAATAACATTTATTGTCTATGAAAATGTTCTGAAGTTGCTTAAACTAGCTAGAAAGAAAGAgtag 939 0.4356 MSTTKPEQWQWEKATAGAVAGFATVAVMHPLDVVRTRFQVHDGRVTLLPSYKNTAHAIFTIARSEGLRGLYAGFLPAVLGSTISWGLYFFFYDKAKQRYARNKDEKLGPGYHLASAAEAGALVCLCTNPVWLVKTRMQLQTPLHQTQPYNGLYDAFKTIMREEGLRALYRGIVPGLFLVSHGAIQFTAYEELRKVIVDLKSKESEIHHQNPDKLLNSADYAVLGATSKVAAILLTYPFQVVRSRLQQRPSIDGIPRYMDSWHVMKETARFEGVRGFYKGITPNLLKNVPASSITFIVYENVLKLLKLARKKE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3870 312 Gene3D Mitochondrial carrier domain 1 104 IPR023395 -
Sto6g3870 312 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 8 308 IPR044712 GO:0006862|GO:0055085
Sto6g3870 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 98 IPR018108 -
Sto6g3870 312 PANTHER BNAA09G07970D PROTEIN 8 308 - -
Sto6g3870 312 PRINTS Mitochondrial carrier protein signature 23 41 IPR002067 GO:0055085
Sto6g3870 312 PRINTS Mitochondrial carrier protein signature 71 89 IPR002067 GO:0055085
Sto6g3870 312 PRINTS Mitochondrial carrier protein signature 116 138 IPR002067 GO:0055085
Sto6g3870 312 Gene3D Mitochondrial carrier domain 105 309 IPR023395 -
Sto6g3870 312 SUPERFAMILY Mitochondrial carrier 11 300 IPR023395 -
Sto6g3870 312 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
Sto6g3870 312 Pfam Mitochondrial carrier protein 218 306 IPR018108 -
Sto6g3870 312 Pfam Mitochondrial carrier protein 107 197 IPR018108 -
Sto6g3870 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 304 IPR018108 -
Sto6g3870 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 195 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3870 Sto-Chr6 43079747 43085528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3870 30 305 Chloroplast and Mitochondria Gene Families AT2G47490 38.516 1.01e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3870 K15115 - gmx:100809599 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3870 6 43079747 43085528 Sto6g3870 6 43079747 43085528 ECH