Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3866 ATGTTTTGGTCGAGAGACATGccttctccttcctcaattttcTCTGCTTATGCCTCCATGACTGCCTCTGTGATGCTTGTGCGTTCCATGGCCAACGACCTCATTCCCCACCCCGTCCGAGGCTACCTCCTCAACGCCTTTCGCTACTTCATCAAGCCCACCTCCCCTCTTCTCACTCTCATCATCGAAGAATCCAGCGGGATCACTCGCAACCAAGTCTTCGATGCTGCAGAGGTATACTTATCTTCGAGGTTGAGTCCCGAGAACGAGAGGCTCAAGATCAGCAAGAGTCCGAAAGACAAGAACTTGATGATTCGGCTAGAGAAAGGAGAGAAGCTAGTGGACTGGTTCGATGGGGTTGAGCTGAAATGGAGATTCATCTGCGCCGAGTCGGagaagaacaacaacaacaacccgAATGATATGGGTATGAGATCGGAGAAGCGATACTTCGAGGTGAGTTTCAACAAGAAGCACAAGGAGATGGTGTTGGGGTCGTATCTGCCATTGATCCTGGAGAAAGCGAAGGAGATGAAGGACGAGGAAAGAGTGTTGAAGATGCATACTTTGAACACTTCGTATTGTTACCCAGGGGTGAAGTGGGATTCCATCAATCTGGAACACCCTTCCACGTTTGACACTCTGGCTATGGAGGCAGAGGCGAAGAATGCGGTGATACAGGATCTGAACAGGTTCGTGAAGAGGAAGGAGTTCTACAAGAGAGTTGGGAGGGCGTGGAAGCGTGGCTATTTGCTGTATGGGCCTCCAGGAACAGGCAAATCCAGCTTGATCGCCGCCATGGCTAATTACTTGAAATTTGATATCTATGACCTTCAACTGGCTAACATAGTCAGAGATTCCGACCTCAGAAAGCTGCTTCTCGCCACTGCTAATAGGTCCATTCTAGTCATCGAGGACATTGATTGTAGCGTCGATCTGCCCGACCGCCGCCACGCAGATGCACataatgatgTGTGTGTGGTTGATGAATTGGCACAGTTGACGTTGTCTGGGTTATTGAACTTCATAGATGGGCTATGGTCAAGTTGTGGAGACGAGAGGATCATAATATTCACCACCAACCACAAGGAGAGGCTAGACCCAGCTCTGTTACGACCTGGAAGAATGGACATGCACATCCACATGTCCTACTGCTCCTACCACGGGTTCAGGTTATTAGCCTCTAATTACTTGGGAATTTCATGTGAGCAGGAGCACCATCTGTTTGGGGAGATAGAAGGGTTGATAGAGGACACCCACATAACCCCTGCCCAAGTGGCAGAGGAGCTCATGAAGACGGAAGACTCTGAACACGCACTTGAAAGCTTCGTCAAGCTTCTTAAGCGGAAGAAGATGGAAGGGGATGTGTGTGAGAATGAGACCCCAGATGGAGACGGAGAGGCCAAGAAGAGGAAAATTAATGGTAAGCAGAGAAAAACTACTTTGAGGAATACCCAGAGGCAAACGCAAAGGAGGACAAGAAGAGGAACTAGCTTGTAA 1500 0.476 MFWSRDMPSPSSIFSAYASMTASVMLVRSMANDLIPHPVRGYLLNAFRYFIKPTSPLLTLIIEESSGITRNQVFDAAEVYLSSRLSPENERLKISKSPKDKNLMIRLEKGEKLVDWFDGVELKWRFICAESEKNNNNNPNDMGMRSEKRYFEVSFNKKHKEMVLGSYLPLILEKAKEMKDEERVLKMHTLNTSYCYPGVKWDSINLEHPSTFDTLAMEAEAKNAVIQDLNRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLANIVRDSDLRKLLLATANRSILVIEDIDCSVDLPDRRHADAHNDVCVVDELAQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFRLLASNYLGISCEQEHHLFGEIEGLIEDTHITPAQVAEELMKTEDSEHALESFVKLLKRKKMEGDVCENETPDGDGEAKKRKINGKQRKTTLRNTQRQTQRRTRRGTSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3866 499 CDD AAA 235 384 - -
Sto6g3866 499 PANTHER BNAA10G17020D PROTEIN 6 471 - -
Sto6g3866 499 Gene3D - 381 454 - -
Sto6g3866 499 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Sto6g3866 499 MobiDBLite consensus disorder prediction 479 499 - -
Sto6g3866 499 SMART AAA_5 246 386 IPR003593 -
Sto6g3866 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 436 IPR027417 -
Sto6g3866 499 MobiDBLite consensus disorder prediction 454 499 - -
Sto6g3866 499 MobiDBLite consensus disorder prediction 454 472 - -
Sto6g3866 499 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Sto6g3866 499 PANTHER BCS1 AAA-TYPE ATPASE 6 471 - -
Sto6g3866 499 Gene3D - 200 380 IPR027417 -
Sto6g3866 499 Pfam ATPase family associated with various cellular activities (AAA) 251 383 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3866 Sto-Chr6 43049522 43051469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3866 224 386 Calmodulin-binding Proteins AT3G56690 27.485 1.65e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3866 - - gmx:100789621 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3866 6 43049522 43051469 Sto11g1525 11 14441076 14442672 ECH
Sto6g3866 6 43049522 43051469 Sto6g3866 6 43049522 43051469 ECH