Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3846 ATGGCAGTTCAGGATGATCCTATGGTGCATCCTAACCTTTCTCCCCCAAATTCCTATGATGCCGTTGTTATCGGCGGTACCTTTGACCGTTTGCACGACGGCCACCGCCTTTTTCTCAAGGAGTCAGCGGACCTGGCGAGGCGCCGGATTGTGATCGGAGTTTGCGACGGTCCTATGCTGACAAAGAAGCTGTTCTCTGAACTAATACAGCCAATTGAGGAAAGGATACGCAATGTTGAGAATTTCATAAAGTCAATCAAGCCAGAGCTGGAAGTGCAAGCTGTACCAATTGTAGATCCCTATGGCCCTTCCATCACAGATGCAAATTTGGAGGCTGTAGTTGTCAGCAAAGAGACATTACCAGGTGGATTGGCAGTGAACAAGAAGAGAGTTGAAAGAGGCCTTTCAGAGCTAAAGATTGAAGTTGTAAATCTGGTCTCCGATGGATCAAGTGAAACTAAACTGAGTTCATCCATGTTACGGAAGCTTGAGGCTGAAAAGGCCAACCAAACAAACcgaaTTTCTTTCATTAACTTCGTTCTGGTTTCTGTTTTCTTTTCAGGTGGGTTTTCGCACAATTTCGCAAAGATGAATGATTTAATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGCCCAGAAGGACCTTGAATCCGATCTTGACATCGAAGCAGGGCAACTCAACCCCATTGAAGACCAAAACCTCTCTCACTTCTTCCAAGAAGTTGACGCAATCAAATCCGAAATGGAAGAGATAACCAATCTCTTATTCGATCTTCAACACCTGAATGAAGAAACAAAATCAACCCACAGCGCCAAAATTCTTCGTGGGCTAAGAGACAGAATGGAAGCAGATATGGTCACCATTCTTCGTAAAGCAAAGATCATCAAGGCAAGGCTAGAATCTCTTGACAAATCCAACATAAGAAATCGCAAAATATCAGAATCCTATAAAGAAGGAACCCCAGTTGATAGAACCAGGATTTCCGTCACAAATGGCTTAAGAGTCAAGCTTAGAGACTTAATGAACGATTTTCAGTCTTTGAGAACCAAGATTCTATGTGATCACAAGGAGGATTTGAAGAGAAGATACTATAGTGCCACAGGGGAGATACCAAGCGATGAGGTAATGGAAAAGATGGTTTCTGGGAGTCTCAAAGTTGAGTTTTTTAAATCAGAGGCTGATATGATGGGTACTCAAGTGAGACATCAGGCTGTGATGGATATACAGAGAAGCTTGGATAGGCTTCACCAAGTTTTTCTTGACATGGCTGTTATAGTTGAGACACAAGGCGAAAAAATGGATAACATTGAAGATAATGTAATGAATGCTAGGAACTTGGTTCATGGTGGAACTAACAGTCTTTACTATGCCAatcagatgaagaagaagatccaAGTTTGGGTATGGTGGGTTTGTGCTGTGGGGTTGATTATACTATTGGTGTGCTTAATTGCactctttatttcttga 1482 0.4123 MAVQDDPMVHPNLSPPNSYDAVVIGGTFDRLHDGHRLFLKESADLARRRIVIGVCDGPMLTKKLFSELIQPIEERIRNVENFIKSIKPELEVQAVPIVDPYGPSITDANLEAVVVSKETLPGGLAVNKKRVERGLSELKIEVVNLVSDGSSETKLSSSMLRKLEAEKANQTNRISFINFVLVSVFFSGGFSHNFAKMNDLMTKSFLSYVELKKQAQKDLESDLDIEAGQLNPIEDQNLSHFFQEVDAIKSEMEEITNLLFDLQHLNEETKSTHSAKILRGLRDRMEADMVTILRKAKIIKARLESLDKSNIRNRKISESYKEGTPVDRTRISVTNGLRVKLRDLMNDFQSLRTKILCDHKEDLKRRYYSATGEIPSDEVMEKMVSGSLKVEFFKSEADMMGTQVRHQAVMDIQRSLDRLHQVFLDMAVIVETQGEKMDNIEDNVMNARNLVHGGTNSLYYANQMKKKIQVWVWWVCAVGLIILLVCLIALFIS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3846 493 PANTHER SYNTAXIN 200 489 IPR045242 -
Sto6g3846 493 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 22 86 IPR004821 GO:0003824|GO:0009058
Sto6g3846 493 Coils Coil 430 450 - -
Sto6g3846 493 CDD SNARE_syntaxin1-like 403 458 - -
Sto6g3846 493 SUPERFAMILY Nucleotidylyl transferase 22 169 - -
Sto6g3846 493 CDD SynN 238 394 IPR006011 GO:0016020
Sto6g3846 493 SMART SynN_4 233 360 IPR006011 GO:0016020
Sto6g3846 493 Coils Coil 248 268 - -
Sto6g3846 493 PANTHER SYNTAXIN-112 200 489 - -
Sto6g3846 493 Pfam Syntaxin 241 434 IPR006011 GO:0016020
Sto6g3846 493 Gene3D HUPs 21 171 IPR014729 -
Sto6g3846 493 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 399 461 IPR000727 -
Sto6g3846 493 Gene3D - 392 492 - -
Sto6g3846 493 Gene3D - 234 366 - -
Sto6g3846 493 ProSitePatterns Syntaxin / epimorphin family signature. 405 445 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto6g3846 493 SMART tSNARE_6 394 461 IPR000727 -
Sto6g3846 493 CDD PPAT_CoAS 22 162 - -
Sto6g3846 493 Pfam Cytidylyltransferase-like 24 162 IPR004821 GO:0003824|GO:0009058
Sto6g3846 493 SUPERFAMILY t-snare proteins 236 454 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3846 Sto-Chr6 42946302 42950945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3846 197 493 SNARE and Associated Proteins AT2G18260 60.912 2.70e-128 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3846 K08486 - cit:102608467 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3846 6 42946302 42950945 Sto6g3846 6 42946302 42950945 ECH