Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3843 ATGTCATTAAGAAGCATAGTTCGTGAACTAAAGGAGATGAGAGATGGAATGGGCAGCATTTCAAAGAGAAATTCTGATGGCAAGCAATGGAACAGTCGGACAAAGTCACATATTGCTCCTGATGTCCCTCTGCCTCCTCCGGTTGAACCAGTTCAACAAGGACAATGGGCAAATCTACCACCTGAATTGCTTTTGGACATAATCAGGAGAGTGGAAGAGAGTGAGACGTCTTGGCCTGCACGGGTTGTCATTCTATTTTGTGCTTCAGTTTGTAAATCATGGAGAGCTATTACAAAGGAGATTGTTAAGACTCCAGAGCAATGTGGAAGGCTCACATTTCCTATCTCATTGAAGCAGCCGGGGCCTCGTGAATCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCCACTTATTTATTGTACTTTGGTCTGGTGCCATcggagaatgagaatgataagTTATTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACAGACTTCGTTATATCTTTGGTTACAGATGATTTTTGTCGCGCCAGCAAAACATATGTTGGCAAACTGAGGCTTTTGACAGGTCTAATTTTTTGGGTACCAAGTTCACAATATATGACAGCCAACCTCCGCATGAAGCTGGAATTTCACTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACTACAATGTTGGCACCATTGCCTATGAGCTCAATGTTCTCCGCACCAGAGGACCAAGAAGAATGAACTGCATCATGAACTCTATCCCTGTCTCAGCTATTCAGGAAGGGGGTACTGCACCAACTCCTACTTCATTTCCTGATGTCTTTGATGAGCGATTTTCTCCCTCACCGGCATTGAAAGGAAAAGAACCAATAACAGATTTGAACTCTGCTAGCCTCTCAGAGCCACCGGTACTGAGCCAGGTCCCAATGGGGCCTCTAGAACTTAAAAACAAGGCTCCTAGATGGCATGAACAGCTGCAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTAGCCTCTGTTAAAAATTTCCAGCTTGTGGCTGCTGTTGATCCAGCTCATAATGTTTCAGCTGAAGAACAGGAAAAGGTAATCTTACAATTTGGTAAGATAGGAAAAGACATATTTACCATGGATTATCGTTATCCACTGTCTGCATTCCAAGCCTTTGCTATCTGCTTGAGTAGCTTTGATAGTaaaccagtctgtgaatga 1230 0.4252 MSLRSIVRELKEMRDGMGSISKRNSDGKQWNSRTKSHIAPDVPLPPPVEPVQQGQWANLPPELLLDIIRRVEESETSWPARVVILFCASVCKSWRAITKEIVKTPEQCGRLTFPISLKQPGPRESPIQCFIRRNRETSTYLLYFGLVPSENENDKLLLAAKRIRRATGTDFVISLVTDDFCRASKTYVGKLRLLTGLIFWVPSSQYMTANLRMKLEFHSKQVSPRVPACNYNVGTIAYELNVLRTRGPRRMNCIMNSIPVSAIQEGGTAPTPTSFPDVFDERFSPSPALKGKEPITDLNSASLSEPPVLSQVPMGPLELKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPAHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDSKPVCE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3843 409 MobiDBLite consensus disorder prediction 15 44 - -
Sto6g3843 409 Gene3D - 49 103 - -
Sto6g3843 409 SUPERFAMILY Tubby C-terminal domain-like 105 409 IPR025659 -
Sto6g3843 409 Pfam Tub family 117 404 IPR000007 -
Sto6g3843 409 PANTHER TUBBY-RELATED 1 408 - -
Sto6g3843 409 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 408 - -
Sto6g3843 409 Pfam F-box domain 56 103 IPR001810 GO:0005515
Sto6g3843 409 Gene3D Tubby Protein; Chain A 115 409 IPR025659 -
Sto6g3843 409 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Sto6g3843 409 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Sto6g3843 409 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Sto6g3843 409 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Sto6g3843 409 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Sto6g3843 409 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Sto6g3843 409 MobiDBLite consensus disorder prediction 22 36 - -
Sto6g3843 409 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3843 Sto-Chr6 42929024 42930848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3843 1 409 TUB Transcription Factor Family AT2G18280 60.859 5.14e-175 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto6g3843 Tub 2.3e-93 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3843 K19600 - gmx:100777506 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3843 6 42929024 42930848 Sto6g3843 6 42929024 42930848 ECH