LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g3842	ATGAAATTAGTTGATAGAATCACAAAGATATTGCCAGATATAGAGGCAGCAAGACCTCGATGCTCATTGGGAATACAGTCTCTCTGCTCTCTAAATAGTGCGATTGATAAGGCCAAGCTACTTCTGCAACACTGCTGTGATTGTAGCAAACTATACCTGGCAATGACGGGAGATGTGGTACTCTCAAGATGCCAAAAGGCAAGAAAATCAATAGAGCAAAACTTGGACAAAATTCGGAGTATGGTTCCAGTTATGTTGTCTGCAGAGATTTCTCGAATAATTGATGATCTGGGATGTGTGTCATTTGCCCTGGACTCGTTTGAAGAAGAGGCTGGGAAGGCTGTTAGAGAATTGCTCCAGAAAAGTGCTTCAGACTCAGATTTAATGGAAGATTCTGAGATTAAAGCTCTTCAAATTGCAGCAGCAAGACTTAACATCACATCCTCAAAGGCCATCTTAACAGAGAAACGATCTATTAGAAAGTTGCTAGATAAGGTTGCACCAAATGAAGCAACAAAAAAGATGATCTTGAGGTATCTTTTGTATCTGTTGAAAAAGTATGGAAACTACATCATTGGAAAACAAATGGAAAAAAAGGTCTATGCTCGTAGTGATGAACCATTTGCCCCTCATAACTCCAGTCATAGCCATTGTGCTGAAATGTGCCCATGCTTGAAATATGGTCAGTGTAGTAATCACACACATGAATTAAGTAGAGGTATACCACCTGAGGAATACAAGTGCCCTATATCTTCAAAACTCATGTATGATCCTGTTGTCATTGCTTCTGGAGCCACATATGAAAGGACGTGGATACAAAAGTGGTTTGATGAGGGTCATGATATATGCCCAAAAACTGGAGAAAAATTGGCCCATATGTCACTAACTTCAAACATGGCCATCAAGGACTTAATATCAAAGTGGTGCACAAGTAATAGAGTCACCCTTCCTAACCCTAGTAGGCAAGCAGAAAAATCTAAGTCATGGGAATCTTCCTCCATTTCAATTAGGAGCTTTGAAGATTCTATGAACAATTTGCACCCCCCGAGGGATTTTAGTAACTTGTCTCTTGGATCGGTAGATAGTAATGGTTCAGATTCCTCTCAGGCTTTGGCTGCTCGTGACTTAAATTCAATGTTAATGAGGACTATTGACAATTCTCAGAGTCACCAATCACATGCAAACATAGACGATTCAGATTTAATGCTTCTGTCTAAGTTCCCTGACCTTGAATGGGACACTCAATGTCTGGTCATTGAAGATCTGAAGTTTTGTTTGAAAGGAAACAGCCAAGCTTTTTGCAATTTGTCATCTGAGAATTTCATTGAATCACTCGTCAAGTTTCTGAACAATGCATATGATCTGCAAGACTCAAAAGCTCTCAGAGATGGAACTCAATTGCTCTTAGAATTTGTGATCAAGTgcagAAACAGCATAACATATCTAGGTGAGGACGCATCTAATATGTTGGGCAATCTTCTCGATTCAGAAGTTACAGGAGAAGCTCTTGCCATATTGGAAGAACTGTCTGGGTTTCAGCATAGTAGAATTAAAATTGCAGTATCCAGTGCACTCACTTCCATTTTAAAGATCCTTGACTCTGAGAGCAGAGAGTTTCAACAAGCAGCTATCAgaataatgtataatttgtcCTTCAACAGTGAAGCTTGTTCCCACATGGTATCTCTTCGCTGCATCCCAAAATTTCTGCCGTTTTTTGCAGACAAGACTGTGTTTAGATACTGTATACGCATGTTGAGAAACATTTGTGATACTGAGGAAGGTAGGGTTTCTGTTGTGGAAACTGAAGGATGCATTTCTGCTATTGCTGAAGTACTAGAGACTGGGAGCAATGAGGAACAAGAACATGCATTGACCCTTTTGCTTAATTTGTGCTCTCAATGTGTGGATTATTGCCAGTTGGTTATGGAACAAGGAATTATGATCTCTTCCCTTTTCTACATCTCCAAGAATGGAAATGACAAAGGAAAGGAGAATGCAATGGAGTTGATCCGACTTCTGAGGGATGTTACATGTGTTAAGAAGGAAGAATGCCTTGTGTCAGCTCATAGCACTTCTTCAAATTCTAATGATCAATctcaacaaaagaaagcaaagaaATGTGCATTTTTCAAGATGCTTTCATGGTTCTCAAAATCCTGTTCACGTGCATGA	2175	0.3899	MKLVDRITKILPDIEAARPRCSLGIQSLCSLNSAIDKAKLLLQHCCDCSKLYLAMTGDVVLSRCQKARKSIEQNLDKIRSMVPVMLSAEISRIIDDLGCVSFALDSFEEEAGKAVRELLQKSASDSDLMEDSEIKALQIAAARLNITSSKAILTEKRSIRKLLDKVAPNEATKKMILRYLLYLLKKYGNYIIGKQMEKKVYARSDEPFAPHNSSHSHCAEMCPCLKYGQCSNHTHELSRGIPPEEYKCPISSKLMYDPVVIASGATYERTWIQKWFDEGHDICPKTGEKLAHMSLTSNMAIKDLISKWCTSNRVTLPNPSRQAEKSKSWESSSISIRSFEDSMNNLHPPRDFSNLSLGSVDSNGSDSSQALAARDLNSMLMRTIDNSQSHQSHANIDDSDLMLLSKFPDLEWDTQCLVIEDLKFCLKGNSQAFCNLSSENFIESLVKFLNNAYDLQDSKALRDGTQLLLEFVIKCRNSITYLGEDASNMLGNLLDSEVTGEALAILEELSGFQHSRIKIAVSSALTSILKILDSESREFQQAAIRIMYNLSFNSEACSHMVSLRCIPKFLPFFADKTVFRYCIRMLRNICDTEEGRVSVVETEGCISAIAEVLETGSNEEQEHALTLLLNLCSQCVDYCQLVMEQGIMISSLFYISKNGNDKGKENAMELIRLLRDVTCVKKEECLVSAHSTSSNSNDQSQQKKAKKCAFFKMLSWFSKSCSRA	724

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto6g3842	724	ProSiteProfiles	U-box domain profile.	241	315	IPR003613	GO:0004842\|GO:0016567
Sto6g3842	724	SUPERFAMILY	ARM repeat	411	674	IPR016024	-
Sto6g3842	724	SMART	arm_5	592	633	IPR000225	GO:0005515
Sto6g3842	724	SMART	arm_5	513	552	IPR000225	GO:0005515
Sto6g3842	724	SMART	arm_5	553	591	IPR000225	GO:0005515
Sto6g3842	724	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	241	316	IPR013083	-
Sto6g3842	724	SUPERFAMILY	RING/U-box	240	318	-	-
Sto6g3842	724	CDD	RING-Ubox_PUB	246	288	IPR045210	-
Sto6g3842	724	Gene3D	-	362	575	IPR011989	-
Sto6g3842	724	Pfam	U-box domain	243	313	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g3842	Sto-Chr6	42925011	42928357	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g3842	2	702	U-box Gene Family	AT4G36550	34.874	3.46e-113	356

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g3842	-		-	gmx:100791627	801.586

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto6g3842	6	42925011	42928357	Sto11g1540	11	14573838	14588260	CCT
	Sto6g3842	6	42925011	42928357	Sto6g3842	6	42925011	42928357	ECH

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