Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3842 ATGAAATTAGTTGATAGAATCACAAAGATATTGCCAGATATAGAGGCAGCAAGACCTCGATGCTCATTGGGAATACAGTCTCTCTGCTCTCTAAATAGTGCGATTGATAAGGCCAAGCTACTTCTGCAACACTGCTGTGATTGTAGCAAACTATACCTGGCAATGACGGGAGATGTGGTACTCTCAAGATGCCAAAAGGCAAGAAAATCAATAGAGCAAAACTTGGACAAAATTCGGAGTATGGTTCCAGTTATGTTGTCTGCAGAGATTTCTCGAATAATTGATGATCTGGGATGTGTGTCATTTGCCCTGGACTCGTTTGAAGAAGAGGCTGGGAAGGCTGTTAGAGAATTGCTCCAGAAAAGTGCTTCAGACTCAGATTTAATGGAAGATTCTGAGATTAAAGCTCTTCAAATTGCAGCAGCAAGACTTAACATCACATCCTCAAAGGCCATCTTAACAGAGAAACGATCTATTAGAAAGTTGCTAGATAAGGTTGCACCAAATGAAGCAACAAAAAAGATGATCTTGAGGTATCTTTTGTATCTGTTGAAAAAGTATGGAAACTACATCATTGGAAAACAAATGGAAAAAAAGGTCTATGCTCGTAGTGATGAACCATTTGCCCCTCATAACTCCAGTCATAGCCATTGTGCTGAAATGTGCCCATGCTTGAAATATGGTCAGTGTAGTAATCACACACATGAATTAAGTAGAGGTATACCACCTGAGGAATACAAGTGCCCTATATCTTCAAAACTCATGTATGATCCTGTTGTCATTGCTTCTGGAGCCACATATGAAAGGACGTGGATACAAAAGTGGTTTGATGAGGGTCATGATATATGCCCAAAAACTGGAGAAAAATTGGCCCATATGTCACTAACTTCAAACATGGCCATCAAGGACTTAATATCAAAGTGGTGCACAAGTAATAGAGTCACCCTTCCTAACCCTAGTAGGCAAGCAGAAAAATCTAAGTCATGGGAATCTTCCTCCATTTCAATTAGGAGCTTTGAAGATTCTATGAACAATTTGCACCCCCCGAGGGATTTTAGTAACTTGTCTCTTGGATCGGTAGATAGTAATGGTTCAGATTCCTCTCAGGCTTTGGCTGCTCGTGACTTAAATTCAATGTTAATGAGGACTATTGACAATTCTCAGAGTCACCAATCACATGCAAACATAGACGATTCAGATTTAATGCTTCTGTCTAAGTTCCCTGACCTTGAATGGGACACTCAATGTCTGGTCATTGAAGATCTGAAGTTTTGTTTGAAAGGAAACAGCCAAGCTTTTTGCAATTTGTCATCTGAGAATTTCATTGAATCACTCGTCAAGTTTCTGAACAATGCATATGATCTGCAAGACTCAAAAGCTCTCAGAGATGGAACTCAATTGCTCTTAGAATTTGTGATCAAGTgcagAAACAGCATAACATATCTAGGTGAGGACGCATCTAATATGTTGGGCAATCTTCTCGATTCAGAAGTTACAGGAGAAGCTCTTGCCATATTGGAAGAACTGTCTGGGTTTCAGCATAGTAGAATTAAAATTGCAGTATCCAGTGCACTCACTTCCATTTTAAAGATCCTTGACTCTGAGAGCAGAGAGTTTCAACAAGCAGCTATCAgaataatgtataatttgtcCTTCAACAGTGAAGCTTGTTCCCACATGGTATCTCTTCGCTGCATCCCAAAATTTCTGCCGTTTTTTGCAGACAAGACTGTGTTTAGATACTGTATACGCATGTTGAGAAACATTTGTGATACTGAGGAAGGTAGGGTTTCTGTTGTGGAAACTGAAGGATGCATTTCTGCTATTGCTGAAGTACTAGAGACTGGGAGCAATGAGGAACAAGAACATGCATTGACCCTTTTGCTTAATTTGTGCTCTCAATGTGTGGATTATTGCCAGTTGGTTATGGAACAAGGAATTATGATCTCTTCCCTTTTCTACATCTCCAAGAATGGAAATGACAAAGGAAAGGAGAATGCAATGGAGTTGATCCGACTTCTGAGGGATGTTACATGTGTTAAGAAGGAAGAATGCCTTGTGTCAGCTCATAGCACTTCTTCAAATTCTAATGATCAATctcaacaaaagaaagcaaagaaATGTGCATTTTTCAAGATGCTTTCATGGTTCTCAAAATCCTGTTCACGTGCATGA 2175 0.3899 MKLVDRITKILPDIEAARPRCSLGIQSLCSLNSAIDKAKLLLQHCCDCSKLYLAMTGDVVLSRCQKARKSIEQNLDKIRSMVPVMLSAEISRIIDDLGCVSFALDSFEEEAGKAVRELLQKSASDSDLMEDSEIKALQIAAARLNITSSKAILTEKRSIRKLLDKVAPNEATKKMILRYLLYLLKKYGNYIIGKQMEKKVYARSDEPFAPHNSSHSHCAEMCPCLKYGQCSNHTHELSRGIPPEEYKCPISSKLMYDPVVIASGATYERTWIQKWFDEGHDICPKTGEKLAHMSLTSNMAIKDLISKWCTSNRVTLPNPSRQAEKSKSWESSSISIRSFEDSMNNLHPPRDFSNLSLGSVDSNGSDSSQALAARDLNSMLMRTIDNSQSHQSHANIDDSDLMLLSKFPDLEWDTQCLVIEDLKFCLKGNSQAFCNLSSENFIESLVKFLNNAYDLQDSKALRDGTQLLLEFVIKCRNSITYLGEDASNMLGNLLDSEVTGEALAILEELSGFQHSRIKIAVSSALTSILKILDSESREFQQAAIRIMYNLSFNSEACSHMVSLRCIPKFLPFFADKTVFRYCIRMLRNICDTEEGRVSVVETEGCISAIAEVLETGSNEEQEHALTLLLNLCSQCVDYCQLVMEQGIMISSLFYISKNGNDKGKENAMELIRLLRDVTCVKKEECLVSAHSTSSNSNDQSQQKKAKKCAFFKMLSWFSKSCSRA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3842 724 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Sto6g3842 724 SUPERFAMILY ARM repeat 411 674 IPR016024 -
Sto6g3842 724 SMART arm_5 592 633 IPR000225 GO:0005515
Sto6g3842 724 SMART arm_5 513 552 IPR000225 GO:0005515
Sto6g3842 724 SMART arm_5 553 591 IPR000225 GO:0005515
Sto6g3842 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 316 IPR013083 -
Sto6g3842 724 SUPERFAMILY RING/U-box 240 318 - -
Sto6g3842 724 CDD RING-Ubox_PUB 246 288 IPR045210 -
Sto6g3842 724 Gene3D - 362 575 IPR011989 -
Sto6g3842 724 Pfam U-box domain 243 313 IPR003613 GO:0004842|GO:0016567
Sto6g3842 724 Gene3D - 576 714 IPR011989 -
Sto6g3842 724 PANTHER U BOX DOMAIN-CONTAINING 2 704 - -
Sto6g3842 724 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Sto6g3842 724 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3842 Sto-Chr6 42925011 42928357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3842 2 702 U-box Gene Family AT4G36550 34.874 3.46e-113 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3842 - - gmx:100791627 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3842 6 42925011 42928357 Sto11g1540 11 14573838 14588260 CCT
Sto6g3842 6 42925011 42928357 Sto6g3842 6 42925011 42928357 ECH