Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3841 ATGGCATCATCTTGGACACCAAGGCAAAACAAACTATTTGAACAAGCCCTAGCTTTATATGATAGGGAAACCCCTGATAGGTGGCAGAATGTTGCCAGAATGGTGGGAAAATCTGTAGAGGAGGTTAAAAGGCACTATGAGATCCTCAAAGAAGATATTGAACGCATTGAGCTTGGCCAAGTCCCATTTCCCCATTACTGGGCAAACCGTAACAACACCTAA 222 0.4369 MASSWTPRQNKLFEQALALYDRETPDRWQNVARMVGKSVEEVKRHYEILKEDIERIELGQVPFPHYWANRNNT 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3841 73 Coils Coil 39 59 - -
Sto6g3841 73 Gene3D - 2 63 - -
Sto6g3841 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 72 IPR044636 GO:0003700
Sto6g3841 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 72 - -
Sto6g3841 73 SMART sant 1 52 IPR001005 -
Sto6g3841 73 CDD SANT 4 50 IPR001005 -
Sto6g3841 73 SUPERFAMILY Homeodomain-like 3 55 IPR009057 -
Sto6g3841 73 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3841 Sto-Chr6 42909889 42910110 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto6g3841 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3841 - - lja:Lj4g3v0973380.1 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3841 6 42909889 42910110 Sto11g1541 11 14604251 14604469 ECH
Sto6g3841 6 42909889 42910110 Sto6g3841 6 42909889 42910110 ECH