Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3836 CTGCCATCGAGCCCGCCACATCAGCAATTACAGAGAGCCGCAAGAGATCCAGATCCACCGAGCTCATCGTCTCCGGTTGCTGCTACCGGACCAAACCCGAGACCTCCTACTACAGTTAGGTACCGAGAATGCTTGAAGAATCACGCGGCGAGCATGGGGGGACACGTGGTGGATGGATGCGGCGAGTTCATGCCAAGCGGAGACGAAGGCACACCGCAATCTTTGAGATGCGCGGCATGTGATTGCCACCGCAATTTCCACCGCAAAGAGACGGAAGGAGAACCacagatgatgatgaatgttccGAACTACTACACACACCACCCTCCTCCTACTAACAAAATCAATAGGATTGTTTCTCCTACTTCTCTACAACATCATCACCAGAATAGATTCTCCGGGGGAGGGTTGTTTCCGCCGATGATGATGGCCTTCGGCGGCAGCGGAGGGGCGGCGGCGGAGTCTTCGAGCGAAGATCTGAATATGTATCAGTATAATATAAATGCGGGAGGGCAAGGGATGGTGCAGCCTGCGCTGATGTCATCATCATCGAGGAAGAGGTTTAGGACAAAGTTTAGCCAGCAGCAGAAGGAGAGGATGATGGAGTTTGCTGAGAAGTTGGGTTGGAGGATCCAGAAACAAGACGAGCAAGAGGTACAGCAGTTTTGTAACCAAGTGGGTGTGAAACGCCAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAAGCCATCAAGAAGAATAAGCAAATAGAAAAATCTTTGCTTAAACAAGATGCTGCTATATATGGCACAATCAAATTGAGAGCTAGCCAAGTGGACATAACACAGAGCACTAAAGAGTTACCCGATGCTGCAGATCTCATAGTATCTGTGGCCCTTGAGGCAGCATCTTCAGCTGTATTAACCGCGTTTTGA 915 0.4885 LPSSPPHQQLQRAARDPDPPSSSSPVAATGPNPRPPTTVRYRECLKNHAASMGGHVVDGCGEFMPSGDEGTPQSLRCAACDCHRNFHRKETEGEPQMMMNVPNYYTHHPPPTNKINRIVSPTSLQHHHQNRFSGGGLFPPMMMAFGGSGGAAAESSSEDLNMYQYNINAGGQGMVQPALMSSSSRKRFRTKFSQQQKERMMEFAEKLGWRIQKQDEQEVQQFCNQVGVKRQVFKVWMHNNKQAIKKNKQIEKSLLKQDAAIYGTIKLRASQVDITQSTKELPDAADLIVSVALEAASSAVLTAF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3836 304 Pfam ZF-HD protein dimerisation region 39 91 IPR006456 -
Sto6g3836 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 41 90 IPR006456 -
Sto6g3836 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 11 247 - -
Sto6g3836 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 247 - -
Sto6g3836 304 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 242 IPR006455 -
Sto6g3836 304 ProSiteProfiles 'Homeobox' domain profile. 183 247 IPR001356 GO:0003677
Sto6g3836 304 Gene3D - 175 246 - -
Sto6g3836 304 SUPERFAMILY Homeodomain-like 174 246 IPR009057 -
Sto6g3836 304 MobiDBLite consensus disorder prediction 1 23 - -
Sto6g3836 304 MobiDBLite consensus disorder prediction 1 39 - -
Sto6g3836 304 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 40 90 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3836 Sto-Chr6 42888121 42891848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3836 22 246 ZF-HD Transcription Factor Family AT2G18350 51.556 6.08e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto6g3836 ZF-HD_dimer 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3836 - - nta:107776098 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3836 6 42888121 42891848 Sto11g1544 11 14612134 14612784 CCT
Sto6g3836 6 42888121 42891848 Sto6g3836 6 42888121 42891848 ECH
Sto6g3836 6 42888121 42891848 Sto11g1544 11 14612134 14612784 ECH