Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3832 ATGCCCAACCACAAACCCTATGACGATCAATCCGACATGTATTCTTCCTTCACTCCCTCGCCTTCCTCTTCCGTTGACTGCACCCTCTCTTTAGGCACACCATCCACGCGTTTAACCCAAGACGAGGAAAAACGCAACCGCCATGAACCTCGCACTACTGCTGTACCCAACTTGTGTTGGGATTTATTACACTCCAAACACACTACTCCCCCACAATCCCACCACACCAAGTCCAGCCGTAGTACCAACAATAATACTACTAACTCATCCAATGATCCCCTCCTTGCTCGTCGCTGTGCCAACTGCGACACCACTTCCACCCCCCTTTGGAGGAACGGCCCTAGAGGCCCCAagTCACTATGCAATGCCTGTGGGATTAGGTTCAAGAAGGAAGAGAGAAGGGCCAGCGCTGTGGCCGCCACGACGACGGCGGCGGCGAACTCATCCGCCGGAGTGATGGAGTCGGCGCAGATGTACAACCATCACAGCAGTACTAGTTCATGGTACGGGCACTCGGCGTCGAGCCAGAAAATGCCGTGCCTCTCGCCGGCGATGGGGAGCGAGTTTCGGTTTGTGGATGAGGGCGATCGAGAGGCCGAAAACGGCATTCCGTTTCTGTCTTGGAGACTGAACGTAACGGACAGACCGAGCCTCGTGCACGACTTTACGAGATGA 675 0.5496 MPNHKPYDDQSDMYSSFTPSPSSSVDCTLSLGTPSTRLTQDEEKRNRHEPRTTAVPNLCWDLLHSKHTTPPQSHHTKSSRSTNNNTTNSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATTTAAANSSAGVMESAQMYNHHSSTSSWYGHSASSQKMPCLSPAMGSEFRFVDEGDREAENGIPFLSWRLNVTDRPSLVHDFTR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3832 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 134 - -
Sto6g3832 224 ProSiteProfiles GATA-type zinc finger domain profile. 93 129 IPR000679 GO:0006355|GO:0043565
Sto6g3832 224 MobiDBLite consensus disorder prediction 66 93 - -
Sto6g3832 224 Pfam GATA zinc finger 99 133 IPR000679 GO:0006355|GO:0043565
Sto6g3832 224 CDD ZnF_GATA 98 130 IPR000679 GO:0006355|GO:0043565
Sto6g3832 224 SMART GATA_3 93 147 IPR000679 GO:0006355|GO:0043565
Sto6g3832 224 PANTHER GATA TRANSCRIPTION FACTOR 18 2 223 - -
Sto6g3832 224 PANTHER GATA TRANSCRIPTION FACTOR 18 2 223 IPR044272 GO:0003700|GO:0009908
Sto6g3832 224 ProSitePatterns GATA-type zinc finger domain. 99 124 IPR000679 GO:0006355|GO:0043565
Sto6g3832 224 MobiDBLite consensus disorder prediction 9 37 - -
Sto6g3832 224 MobiDBLite consensus disorder prediction 1 93 - -
Sto6g3832 224 Gene3D - 95 168 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3832 Sto-Chr6 42855439 42856214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3832 22 224 C2C2-Gata Transcription Factor Family AT3G50870 48.333 1.64e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto6g3832 GATA 5.2e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3832 - - gmx:100790571 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3832 6 42855439 42856214 Sto11g1546 11 14635819 14636604 CCT
Sto6g3832 6 42855439 42856214 Sto6g3832 6 42855439 42856214 ECH