Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3812 ATGGGGGTGAAGAACGGAGTGAGGAACGATGAATATGCAGGATCACCGATTTTGGTGCTGGAAGAGAAGaaaatgaaagaggaagtaGACGTTAAGAATGAAGAGCCGTTACTTATACCAAGCTCAATggcagaagaggaagaaaatctTTTGGAAGCTCGGAtcaaggaagaggaggaggaatcCAAAAACATGCCAGAGGAGGCACCCAACTTGAATGATACACAGTTTAGCAAGTTGGAGGAGCTTTTAACGCAAACTCAACTGTACTctgaatttttactggaaaAAATGGATGACATTACACTGAATGGGGATGAACAAGAGGATGAGCCTGCTGAACAAAAAAGGGGTCGTGGCTcaaaaagaaaagcaaattCACAATACAATAATAAGAAAGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGCGAGGGAACTGAAGATGTGAACCTGAATGAAGAGGAAAGAATTGAGAAGGAGCAGAAAGAGCTTATACCTCTGTTGACAGGTGGAAAGTTGAAGCATTATCAAATGAAAGGTGTCAAGTGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACCATTGGTTTCCTTGCACATCTAAAAGGGAAAGGTTTAGATGGGCCATACTTGATAATTGCTCCTCTATCAACCCTCTCAAATTGGGTGAATGAGTTTTCTCGGTTTACTCCATCCCTCACTACTATTATCTACCATGGTAACAAGACGGAAAGGGATGACATACGAAGGAAATATATGCCTAGAAAAATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCATTAAACGATGCAAAGAAATATCTCAGGTTCTACCAGTGGAagtatcttgtaattgatgagGGACACAGGCTCAAAAATTTCAAATGCAAATTAGTGCAGATGTTGAAATTCTTACCTGTAGAAAATAAGCTTCTATTAACTGGGACACCTCTTCAAAATAACTTGGCTGAGTTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCGGGGAAGTCTAGTAATGGAGCAACAAAAGAAGAATtagaagagaaaagaaggtcCCAGGTGGTTGCTAAACTCCATGCCATTTTGCGTCCCTTTCTCCTGCGACGGATGAAAACTGATGTTGAGCAGATGTTGCCACGTAAGAAGGAGATcattatatattcaaatatgACTGAACATCAGAAGCGTTTTCAGGAACATTTAGTTAATAAGACATTGGAGGGCTATTTACTAGAAAAATCTGCGACTGGTCGTGGAtcaaaaaaacttaataatctGGTCATTCAACTTAGGAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCATTTGATGGCTCATACTTTTATCCACCTGTCAATGAGATAGTTGAGCAATGTGGGAAATTCCGTTTACTGGACCGTTTGTTGACTCATTTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACCAAAGTGTTGGACATAATGGATTACTATTTTAGTGAGAAGGGCCTTGAAGTATGCAGAATTGATGGTCATGTGAAACTAGATGAAAGGAAAAGACAGATTCAGGAATTCAATGATGTGAACAGTGAACACCGGGTCTTCCTTCTCAGTACTAGGGCTGGGGGTTTGGGAATTAACCTTACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTggAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCAACAGCTCAATCTGTGGAGGGTCGCATGTTGAAAAGAGCtttcagcaagttaaggcttgAGCATGTGGTGATTGCAAAAGGACATTTTCATCAAGAAAGAACCAAGACGAACAGTGTGGTGACCACAGAGGAAGAGGAATTGTTGGGTTTGCTTCAAGAGAAAGAATCTGAGGAAGACAAAGCGATCCAAACAGATATCAGTGATGAAGACTTGGAGAAGGTTTTGGATCGCAGTGATCTTATGCCAGATAACTTAAATTGTCCAAGCAACGCTCTTCCTCTTAAAGGGCCTGGATGGGAAGTGGTGATTTCAAGCGGCACTGGGAGCATGCTTTCTACTCTTAACATACTCTGCGTAAAATGCATTGAAGAGACTGGACACATTGATTCTATTTGGAATTTTGTTGACATATTTCATTTCATGGTTGATGTTGCTGTAGCATTCCCTTTTGGCAGGACTATAACATTTTCGAGGGAGAATGGAAAGATCGCCAATCATATGCTAATTGTACCCTGGGTGTAA 2397 0.3809 MGVKNGVRNDEYAGSPILVLEEKKMKEEVDVKNEEPLLIPSSMAEEEENLLEARIKEEEEESKNMPEEAPNLNDTQFSKLEELLTQTQLYSEFLLEKMDDITLNGDEQEDEPAEQKRGRGSKRKANSQYNNKKAKRAVAAMLTRSKESEGTEDVNLNEEERIEKEQKELIPLLTGGKLKHYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWVNEFSRFTPSLTTIIYHGNKTERDDIRRKYMPRKIGPKFPIVITSYEVALNDAKKYLRFYQWKYLVIDEGHRLKNFKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKSSNGATKEELEEKRRSQVVAKLHAILRPFLLRRMKTDVEQMLPRKKEIIIYSNMTEHQKRFQEHLVNKTLEGYLLEKSATGRGSKKLNNLVIQLRKNCNHPDLLESAFDGSYFYPPVNEIVEQCGKFRLLDRLLTHLFARKHKVLIFSQWTKVLDIMDYYFSEKGLEVCRIDGHVKLDERKRQIQEFNDVNSEHRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLRLEHVVIAKGHFHQERTKTNSVVTTEEEELLGLLQEKESEEDKAIQTDISDEDLEKVLDRSDLMPDNLNCPSNALPLKGPGWEVVISSGTGSMLSTLNILCVKCIEETGHIDSIWNFVDIFHFMVDVAVAFPFGRTITFSRENGKIANHMLIVPWV 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3812 798 MobiDBLite consensus disorder prediction 35 75 - -
Sto6g3812 798 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 5 740 - -
Sto6g3812 798 MobiDBLite consensus disorder prediction 47 67 - -
Sto6g3812 798 Coils Coil 665 685 - -
Sto6g3812 798 Gene3D - 414 716 IPR027417 -
Sto6g3812 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 358 IPR014001 -
Sto6g3812 798 MobiDBLite consensus disorder prediction 103 131 - -
Sto6g3812 798 PANTHER SNF2/RAD54 HELICASE FAMILY 5 740 - -
Sto6g3812 798 SMART ultradead3 174 369 IPR014001 -
Sto6g3812 798 Gene3D - 144 407 IPR038718 -
Sto6g3812 798 CDD SF2_C_SNF 490 624 - -
Sto6g3812 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 665 IPR001650 -
Sto6g3812 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 408 IPR027417 -
Sto6g3812 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 709 IPR027417 -
Sto6g3812 798 Coils Coil 41 63 - -
Sto6g3812 798 Pfam Helicase conserved C-terminal domain 502 614 IPR001650 -
Sto6g3812 798 SMART helicmild6 530 614 IPR001650 -
Sto6g3812 798 Pfam SNF2-related domain 181 478 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3812 Sto-Chr6 42735739 42742359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3812 164 635 RAD5 or RAD16-like Gene Family AT3G16600 24.785 7.04e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto6g3812 SNF2_N 1.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3812 K19001 - qsu:111991807 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3812 6 42735739 42742359 Sto6g3812 6 42735739 42742359 ECH