Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3810 ATGGGAGACTTCAACGATGCTTTCATGCGTAACCAGAACGCCGCTGTTCAGGCTCGTACCAAAGCCCAGAACCGTGCCAATGTCCTCCAGCTCAAGCTGATTGGACAAAGTCACCCGACTGGTCTCACAGCCAACCTTTTGAAGCTGTTTGAGCCCAGGCCTCCGTTAGAGTATAAACCACctccagaaaaaagaaaatgtccTCCATTAACAGGGATGGCACAATTTGTCAATAAGTTTGCTGAGCCCGGAGATCCTGAATATGCTCCTCCTATCCAAGAAGCTGAAACTcctGCCGAAAGAAGAGCTAGAATACACAAACTAAGATTAGAGAAAGGAGCAGCAAAGGCCGCTGAGGAGCTGGAGAAATATGATCCACATAATGACCCAAATGTATCAGGAGATCCCTACAAGACCTTGTTTGTGGCAAGACTTAGTTATGAGACCACCGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACagacaaaaatacaaataagCCTAAGGGTTATGCATTCATTGAGTACTTGCACACAAGAGATATGAAAGGTCTGTTCCGGCAAATTGATTTTTCGGTCATCATTTTATTTGCGGCTTTTGAAGCTCATCCATCTCCTGTTAATCATGCAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGACGTTGAACGTGGGAGGACTGTTCCTAATTGGAGACCTCGTCGACTAGGTGGTGGGCTTGGTACTACTAGAGTAGGAGGTGAAGAAGTTAATCAACGATATTCTGGGAGGGAGCAACTGCAATCAGGACCCTCTCGTTCTGAAGAACCTAAAGTGCGAGAGGAACGGCAGGGTGATCGGTAA 897 0.4437 MGDFNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVNKFAEPGDPEYAPPIQEAETPAERRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVTDKNTNKPKGYAFIEYLHTRDMKGLFRQIDFSVIILFAAFEAHPSPVNHAAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSRSEEPKVREERQGDR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3810 298 SMART rrm1_1 139 207 IPR000504 GO:0003723
Sto6g3810 298 CDD RRM_snRNP70 137 254 IPR034143 GO:0030619
Sto6g3810 298 Gene3D - 125 277 IPR012677 -
Sto6g3810 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 243 IPR000504 GO:0003723
Sto6g3810 298 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Sto6g3810 298 PANTHER - 1 200 - -
Sto6g3810 298 PANTHER - 220 298 - -
Sto6g3810 298 MobiDBLite consensus disorder prediction 250 298 - -
Sto6g3810 298 SUPERFAMILY RNA-binding domain, RBD 126 193 IPR035979 GO:0003676
Sto6g3810 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 193 IPR000504 GO:0003723
Sto6g3810 298 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 220 298 - -
Sto6g3810 298 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3810 Sto-Chr6 42722386 42726604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3810 138 186 C2H2 Transcription Factor Family AT2G19380 38.776 3.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3810 K11093 - cit:102622406 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3810 6 42722386 42726604 Sto6g3810 6 42722386 42726604 ECH