Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3795 ATGAATCCTCATCCTATTGAAGATCATATGGTGCTCATGTCTCAGTTATACCCTGCTGCTTACTCTCAAATAATTCCTCAACAAgAGCAAGTGAATCTTCTAGAATTAAACTTTGGGAGTGAACACAAATTGGAGTCGGAACGCAAGGACCGGCTAGCATCGGAGCTTGGGTTGGATCCACGTCAAGTGGCCGTGTGGTTCCAAAACCGAAGAGCTCGTTGGAAGAACAAGAAGTTGGAAGAAGAGTACTCCACCCTTAAGAAACTCCACGACTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAACTGAAGGAGCAGCTTTCAGAAGCAGAGAAAGAGATTCAAGGGCTTCTTGAACGAGCAGATAGAGCGTCAAGCAGCAATAGCCCAAGTTCATCGCAGTCAATGGAAGCTGTGGACCCACCATTTCTAGGAGAGTTCGGAGTGGAGCCTTATGATGATCATGTCTTTTACATCAATGGCATGGATGAATGGATATACATCTGA 519 0.4566 MNPHPIEDHMVLMSQLYPAAYSQIIPQQEQVNLLELNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKLHDSTILEKCRLETEVLKLKEQLSEAEKEIQGLLERADRASSSNSPSSSQSMEAVDPPFLGEFGVEPYDDHVFYINGMDEWIYI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3795 172 Coils Coil 69 131 - -
Sto6g3795 172 Gene3D - 21 84 - -
Sto6g3795 172 SUPERFAMILY Homeodomain-like 21 79 IPR009057 -
Sto6g3795 172 MobiDBLite consensus disorder prediction 122 142 - -
Sto6g3795 172 MobiDBLite consensus disorder prediction 125 142 - -
Sto6g3795 172 ProSiteProfiles 'Homeobox' domain profile. 29 77 IPR001356 GO:0003677
Sto6g3795 172 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 28 165 - -
Sto6g3795 172 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 165 IPR045224 GO:0003700
Sto6g3795 172 SMART HOX_1 19 81 IPR001356 GO:0003677
Sto6g3795 172 Pfam Homeodomain 25 76 IPR001356 GO:0003677
Sto6g3795 172 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Sto6g3795 172 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Sto6g3795 172 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Sto6g3795 172 CDD homeodomain 28 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3795 Sto-Chr6 42599095 42600709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3795 1 162 Homeobox Transcription Factor Family AT4G36740 51.000 1.49e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto6g3795 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3795 K09338 - gmx:100809616 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3795 6 42599095 42600709 Sto11g1570 11 14804204 14810194 CCT
Sto6g3795 6 42599095 42600709 Sto6g3795 6 42599095 42600709 ECH