Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3778 ATGGCTTCTCATATCTTGAATTCCCTAGTATGGCACTCTGTTTTGGCTATTGCAATTATTACCACCCTTTGCTCTCCAACACTAATTAGTTGTGCCAAGCACACAAAGATGGCTGGATTGAGCATGAATGTGATTGATGAGTGCTGGAGATTGAACCCCGATTGGCGCAAACACCGCACACAACTTGCCACTTGCTCCGTCGGCTATGCTGGCAAGATGATCAACAACATTGGGAACGACCTCCTCCACTACAAGGTCACTGACCCTAGCGATGACCCCATTACCCCCAAACCTGGCACTTTGAGATATGGAGCTTCCGTCATTCAAGCCAAAGTCTGGATTACTTTCAAATCAGACATGCTCATTACCCTCCAGAGACCCCTTCTCATCAGCAGCTTCACCGCCATTGATGCCCGAGGCGTCAACGTTCACATTGCTCATAATGCATGCTTGATGATTTTCAAGgcgaCCAACATAATAATCCATGGGCTTCGAGTCCATCACTGTAGGTCTCAGCCCGCTGGGATGGTGATGGGCCCCGAAGGGAAGGTGATCACAGTGGGACAGGTGGATGGGGACGCAATCAGACTGGTGACTGCCTCAAAGGTTTGGATTGACCATAACACATTGTACAACTGTCCAGATGGGCTTCTGGATGTGACAAGGGGTTCAACGGATGTGACGGTGTCCAATAACTGGTTCAGAGAGCAAAACAAGGTGATGCTTCTTGGACACGATGATGGGTATGTGAGAGACCAGAACATGAAGGTGACGGTTGTGTACAACCATTTTGGACCAAACTGCAACCAACGCATGCCCAGGATTCGTCATGGGTATGCACACGTGGCGAACAATCTGTACCAAGGATGGGGGCAATACGCGATTGGGGGAAGCATGGAACCCAGCCTGAAAAGCGAAAGAAACCTGTTCATAGCGCCCACATCTGGAAGTAAAGAGGTGACATGGAGAAAAGAGAGCAATGGGAGTGGGGGGATATGGGAATTTCATTCGGTGGGGGACGTGTTTGAGAACGGAGCTTACTTCACAGAAACGGATGGAGGAAGAGTGCCAAAGCCCCATTATAACATGCAACAGATATTCAAAGTTGCAGATGCCACAGCGGTGAGGTCTTTGACAAGATCATCCGGCGCATTACGTTGCACCAAAACCTCTAGATGCTGA 1182 0.4898 MASHILNSLVWHSVLAIAIITTLCSPTLISCAKHTKMAGLSMNVIDECWRLNPDWRKHRTQLATCSVGYAGKMINNIGNDLLHYKVTDPSDDPITPKPGTLRYGASVIQAKVWITFKSDMLITLQRPLLISSFTAIDARGVNVHIAHNACLMIFKATNIIIHGLRVHHCRSQPAGMVMGPEGKVITVGQVDGDAIRLVTASKVWIDHNTLYNCPDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWGQYAIGGSMEPSLKSERNLFIAPTSGSKEVTWRKESNGSGGIWEFHSVGDVFENGAYFTETDGGRVPKPHYNMQQIFKVADATAVRSLTRSSGALRCTKTSRC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3778 393 Gene3D - 42 386 IPR012334 -
Sto6g3778 393 PANTHER PECTATE LYASE 18-RELATED 26 390 IPR045032 GO:0030570
Sto6g3778 393 SUPERFAMILY Pectin lyase-like 42 384 IPR011050 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Sto6g3778 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Sto6g3778 393 Pfam Pectate lyase 142 310 IPR002022 -
Sto6g3778 393 SMART amb_all 119 316 IPR002022 -
Sto6g3778 393 PANTHER PECTATE LYASE 26 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3778 Sto-Chr6 42479322 42480624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3778 73 320 Polysaccharide Lyase AT5G09280 71.371 8.20e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3778 K01728 - gmx:100780437 639.032