Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3776 ATGTTGGTTGTCGAGTGGGGGTACTGTGCTATTTCCATTGACATTCTGTTAACGTTTTTGAAGGTTCTGAGGAGGGATATCCCATGGGAGACATATATGAGCACTAAGTTGATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGCTATGATCATAAATCACAAAGTCAAAGAGCACAGTTGCTGgatgatGATGGTCCGGCTTATGTACGTGTATTTGTTCATGTTTTGCGTGATATACACAAAGAAGAGACTGTGGAATATGTTCTGGCATTAATAGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGACTCTTCCATGATAAGTCCCTTGAAGATGAAGATGCCTATGAGCCtttcttaaAAAAAGATATATTACCCATGACTGAGGTTGCTTTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTTGCTAGGCCAAAAAGTCAGCACAACATTGTTGCAAATGGAGGAGCTTCAAATTCGAAGAAGACATTTACTACCATTGATGATGTTTTGAAAGAATTAGTAAAATGGCTTTGTGAACAGTTGAGGAACCCTTCTCATCCTAGTCGTGGTGTCCCAACTGCTATCAATTGCTTAGCAACTCTTCTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAAGTAGGTGGGGTGAAGTTGCTTGTGCCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTCTTATATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCGGCAATTGAATATCTGGCTACTTCGAGAGCTCTTCCAAGACTTATTGATGTTGTTAAGACTTCGACTAAAGAGAAGGTTGTTAGAGTAGTGGTCTTAACCCTTAAAAACTTGCTGTCCAAAGGGACATTGGGTGCCCAAATGGTTGACCTTCAGCTGCCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCTTTGAATTACCTGGAAGAAGGGCTTAAGGATAACATTAAGAAACTGAGTTCTTTTGATAAGTATAAGCAAGAAGTTCTCCTTGGCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGAAAATATTACCAACTTTGAAGAAAATGACTTTCAGATTCTAAGGGTCCTAATTACAATTTTGGACACTTCTGGTGATCCAAGAACTCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTCGTTCAACATCATCCTGCTGGGAGGATCATAGTGACGGACCTCAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAATGCTGAGGTTACTAAAAATGCGCTGCTCTGTATCCAACGGCTCTTCTTGGGTGCAAAGCCCTCCTTCTGCAACATTAACGTTACTGTCAGATTAACCCAACAAGCTCGGTCCTACGGTCGTGAACCCTTTCCCACTAAAATTTCTCACTACCTTTACCGTGCCAAGCTCATAGACTCCATTCGTCTCAATCTGCGATCCAATCCTCCCAACTCACTCCATCGTCTTCTAAACGATCGTCTCCTCGACTCTTTCGTTGTCACTCAGGCGCTGCGCTCTGCTCCCTCTGCAACTTCTGCTCTTTCCCTTGTAGATGCCCTTGATAAAATTCCAAGCTTTTCGCATACCCAGAATACCCTCCATGCCCTGGCCACTGTGCTTGCCAAGTCACGCCGAAGTGCACAACTCAAATCCCTCATTACTGATATCACTGCTGGAAGATTCGGCAATGTTCGCATCACCCATATGAATCTCTTGCAGTGGTATGCTGCAGCTGGGGATCTTGAGTCAGTTCTTGAGGTCTGGGATGAGTATAAACTCGCCAATACACGTGCCTGCACTGAATCATATAACATTATCATGGCTCTGTATGCTCAAATGGGTAAGGACTCTGAGGCAGTAAAGATATTCCACAGAATGATTGATGAAGGAGTCATTCCAAATTGCAGAACCTATACAATAATTATCGAGCACCTTGTAAATTCTGGCAAATCGTTCGCAGCCATGGAGGTCTTCAATATACTACCTTTAATACGGATCAAACGCACTTTGAAGCAGTACTCAATTCTGATTGAGAGTTTCATTGGAATCAAACGTTTTGATGAAGTTAAAACTCTACTCAATGAAATGCAAATTGATGGAACACTGCCTAGTAGAGCCATGTGCTTTTCACTGCAGCAGATTCAGGAGGAAGGATTTCTCAAGGACACTGATAAGTTCTTCAAAGAAAGTTTGTCAGATGAGAGAATTAAGAAGCTAGGATATTCTGTTGACAgtagtgatgatgatgagaacGAAGATGAAAGTACAAGTCATGCTTGTGAATATGAGAATGGAATCCACCTAAAACCATGGATGGACCCACGAGCCTTGGCAAGTGCCTTACAGAATTGGGGTCCTGATGAGGTATCAGCACTGGAGGCTGCAAATTTTGTTTGGACAACGAGGTTGGTCTGCAAGATCCTTAGAAATTTTAAGTCACCAGAAATTGCTTGGAATTTCTTCTGCTGGGTTGCTTATCAACCTGGATTTACCCATGACATATACACAGTACAAAGAACCATGACCCTTCTAGCACGTCATGGACGTACAGAATTGGTTGATAGACTCATCTCCAAGATAAAAATGGAGGGAATGAGATTGCCATTCAGCACCATAAGGCTAATCATTGACTTCTATGGAATTTCGAAGAATGCTGATGCTGCTCTCAAGGTTTTCAAGGCTGATCGAACACTTTGTGGGCctatatcaaaatttaatctGATGCTCTTGTATTCCTCTATTCTAAGAGCATTAACCAAGTGTGGGAGGAATTCTGATGCCTTGGATATACTTGATGAGATGATTTTGAATGGCATATTCCCAGATATCCAGACGTTTTCTGGTCTAATGCAACATTTTGCGCACCTTGGAGACATAAAAAGAGTGCAGAAGCTCTTTGTAATGGTTAGGCAGAGCGGCTTAGAGCCAGATGCTTATCTATTCAAGGTACTTATCCAAGGTTATTGCAAGTCAGGAAGAGCTGCACTAGCATGGAGGATATTTGAAGACATGAAGAATTCAGGTTTGATTCCTGATTCTGCCACAAAAGAGTTGCTTGTGAAGAGCCTTTGGAAAGAAGGGAGAAGGAGGGAAGCTGCAGCCGTAGAAGAGAGTTGTGAAGAAATAAATGAGGTCCTTCCACTTACATTGCGTGGTCATATATGGTCTGTCAGCTCTGCTGATCTCACAAGAGTTTATAACATTTATTCAGATAGTTTTTTGTTGACTGATGGCTAG 3306 0.4171 MLVVEWGYCAISIDILLTFLKVLRRDIPWETYMSTKLISGTSLQLLRRYDHKSQSQRAQLLDDDGPAYVRVFVHVLRDIHKEETVEYVLALIDEMLTANPKRARLFHDKSLEDEDAYEPFLKKDILPMTEVALERKLVHTREKFARPKSQHNIVANGGASNSKKTFTTIDDVLKELVKWLCEQLRNPSHPSRGVPTAINCLATLLKEPVVRSSFVQVGGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRALPRLIDVVKTSTKEKVVRVVVLTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNYLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEENDFQILRVLITILDTSGDPRTLAVACFDLSQFVQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKPSFCNINVTVRLTQQARSYGREPFPTKISHYLYRAKLIDSIRLNLRSNPPNSLHRLLNDRLLDSFVVTQALRSAPSATSALSLVDALDKIPSFSHTQNTLHALATVLAKSRRSAQLKSLITDITAGRFGNVRITHMNLLQWYAAAGDLESVLEVWDEYKLANTRACTESYNIIMALYAQMGKDSEAVKIFHRMIDEGVIPNCRTYTIIIEHLVNSGKSFAAMEVFNILPLIRIKRTLKQYSILIESFIGIKRFDEVKTLLNEMQIDGTLPSRAMCFSLQQIQEEGFLKDTDKFFKESLSDERIKKLGYSVDSSDDDENEDESTSHACEYENGIHLKPWMDPRALASALQNWGPDEVSALEAANFVWTTRLVCKILRNFKSPEIAWNFFCWVAYQPGFTHDIYTVQRTMTLLARHGRTELVDRLISKIKMEGMRLPFSTIRLIIDFYGISKNADAALKVFKADRTLCGPISKFNLMLLYSSILRALTKCGRNSDALDILDEMILNGIFPDIQTFSGLMQHFAHLGDIKRVQKLFVMVRQSGLEPDAYLFKVLIQGYCKSGRAALAWRIFEDMKNSGLIPDSATKELLVKSLWKEGRRREAAAVEESCEEINEVLPLTLRGHIWSVSSADLTRVYNIYSDSFLLTDG 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3776 1101 Gene3D - 355 455 IPR038497 -
Sto6g3776 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1000 1034 IPR002885 -
Sto6g3776 1101 Gene3D - 18 342 IPR011989 -
Sto6g3776 1101 SMART arm_5 413 453 IPR000225 GO:0005515
Sto6g3776 1101 SMART arm_5 252 293 IPR000225 GO:0005515
Sto6g3776 1101 SMART arm_5 206 251 IPR000225 GO:0005515
Sto6g3776 1101 Pfam PPR repeat family 999 1046 IPR002885 -
Sto6g3776 1101 Pfam PPR repeat family 623 669 IPR002885 -
Sto6g3776 1101 Pfam PPR repeat 934 962 IPR002885 -
Sto6g3776 1101 TIGRFAM PPR: pentatricopeptide repeat domain 934 966 IPR002885 -
Sto6g3776 1101 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Sto6g3776 1101 TIGRFAM PPR: pentatricopeptide repeat domain 1004 1036 IPR002885 -
Sto6g3776 1101 Pfam V-ATPase subunit H 340 452 IPR011987 GO:0000221|GO:1902600
Sto6g3776 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 965 999 IPR002885 -
Sto6g3776 1101 SUPERFAMILY ARM repeat 21 453 IPR016024 -
Sto6g3776 1101 Gene3D Tetratricopeptide repeat domain 810 925 IPR011990 GO:0005515
Sto6g3776 1101 Gene3D Tetratricopeptide repeat domain 524 783 IPR011990 GO:0005515
Sto6g3776 1101 Pfam V-ATPase subunit H 22 334 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sto6g3776 1101 Gene3D Tetratricopeptide repeat domain 926 1074 IPR011990 GO:0005515
Sto6g3776 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 930 964 IPR002885 -
Sto6g3776 1101 PANTHER OS01G0167750 PROTEIN 466 1098 IPR044175 -
Sto6g3776 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3776 Sto-Chr6 42462295 42470690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3776 17 456 Primary Pumps ATPases(2) AT3G42050 73.077 0.0 653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3776 6 42462295 42470690 Sto6g3776 6 42462295 42470690 ECH