Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3773 ATGCAGGTGGACCGTAGATACAATCACTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGTTACGGGGCGGCGGTTCCATACACAGCGTTGGCACAGAAAGCAATGTCAAGGCATTTCCGATGTCTGAAGGATGCGATATCAGCGCAGCTGAAGCACAGTTGCGAGTTGCTGGGTGAGAAGGATGGGTTGGGGTCGTCGGGTTTGACGAAGGGAGAGACCCCAAGGCTGAAGCTGCTTGAGCAAAGCCTGAGGCAACAGAGAGCCTTCCATCAGATGGGCATGATGGAACAGGAAGCATGGAGACCCCAGCGAGGCCTTCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGCTTATCGAGAAATCAGGTATCAAACTGGTTCATAAACGCGAGGGTACGGTTGTGGAAACCCATGGTAGAAGACATGTACCAACAAGAAATAAAGGAAGCAGAAGGTACagaagaaagagaaatgaaGGAAAGCAGCAACAGCAGTGGGCCGGTAGCACAAACTCCAACAGCCACAACATCAACCGCAACAGAGGCACCTCCCCCAACTCCAACACCCAAAAGATCCGACGTCGTCAATGCCACTGAAAGCGACCCTTCACTCCCACCAATCAATAATAGACAACCCTTCTCGGAAAACCAAGGCAGCTCCACCGCCACCGGCTCTGAGGTGGCGCCACCGGGATCTTACTGCTTCGACTCAGACAGATCAATGCCTGCGGATGACACGTGTCGACATGGCAGCCTAGTTACAGGAGATGAGTACGGGACCGCCTCTGCTGACATTGGATCTACTCTCATTAGGTTTGGGACCACTGCCGGTGATGTCTCACTCACCCTTGGCCTACGCCACGCCGGCAACATCCCCGACACTTCTCCTTTCTCGGTTAGAGACTTCGGAGGCATTTAA 1005 0.5214 MQVDRRYNHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCELLGEKDGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEIKEAEGTEEREMKESSNSSGPVAQTPTATTSTATEAPPPTPTPKRSDVVNATESDPSLPPINNRQPFSENQGSSTATGSEVAPPGSYCFDSDRSMPADDTCRHGSLVTGDEYGTASADIGSTLIRFGTTAGDVSLTLGLRHAGNIPDTSPFSVRDFGGI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3773 334 MobiDBLite consensus disorder prediction 179 268 - -
Sto6g3773 334 SMART HOX_1 106 170 IPR001356 GO:0003677
Sto6g3773 334 SMART prehox3 1 54 IPR006563 -
Sto6g3773 334 Gene3D - 109 171 - -
Sto6g3773 334 ProSiteProfiles 'Homeobox' domain profile. 103 166 IPR001356 GO:0003677
Sto6g3773 334 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 323 - -
Sto6g3773 334 MobiDBLite consensus disorder prediction 191 210 - -
Sto6g3773 334 SUPERFAMILY Homeodomain-like 107 173 IPR009057 -
Sto6g3773 334 Pfam Associated with HOX 2 53 IPR006563 -
Sto6g3773 334 CDD homeodomain 106 167 IPR001356 GO:0003677
Sto6g3773 334 MobiDBLite consensus disorder prediction 220 256 - -
Sto6g3773 334 Pfam Homeobox KN domain 123 162 IPR008422 GO:0003677|GO:0006355
Sto6g3773 334 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 3 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3773 Sto-Chr6 42438300 42441227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3773 2 332 Homeobox Transcription Factor Family AT2G23760 52.463 1.63e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto6g3773 POX 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3773 - - ccaj:109799862 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3773 6 42438300 42441227 Sto11g1587 11 14967280 14969672 CCT