Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3750 ATGGTTTACTCAACAAGAGCCCAAAACAAGAGCACATGCGAGAGAAACTGCGGAATTCACTCCTTGCCGTACCCTTTTGGGTTCTCTGAAGATTGCGAAATCAAACTAAACTGCAACAACAGCACCAACCAAATGCAAATTGGGGAATTTCAGGTTCAAAACGTAACCTCTTCCAGCATACTCATCAATCTTCCTGCGAAATGTAACCGTAGCTTACAATCCATGGAGCCCCTTTTCGCCACAAACTTTGCTCCCACAAGGAATAATAGCCTTCTCGTGCAAAATTGTACATCTCCGCTTGGTGGCTGCGTCATACCCACCTCCAGCTTTATGACCAACCAGGTTGAGTTGGAAGGGTGCGATCAAAGAAGTGATAACATAAGTTGCTTCACGCAAGGCCAAGAAAGTGTTAATCAAGATGTTGTGAGTTTTGATGATGTGAACAAAAGTGGGTGCAGATTTTTGTTCTCGTCCATTGCTATTGAGCAGACGAAAGAGAGAGAACCACAGGTTGTGCTTCAGTTTCAGATGCTTGAGTTGGGGTGGTGGCTTCAAGGCTCGTGCGAACAGTGCTCTCCCACTGCCAATTGTACAACGGTGAGTATCCCCGACGGGAAGTTTGGGTTCCGGTGTCAATGCCCTGAAGGTTATGTCGGAGATGGGTTCACCAACGGCGCCGGTTGCCGGAGATCAGGTTCTGAGTGTAACGCTTCAACACTGACGTCTGGCGGATGCGGAGGAGCAACTAAAATAGGCGTTCTTGTTGGAGGGATCACTGCTGGAGCTTTCATAATGGCCGTTCTGTGTATTCTAGGTTATTACGCACGACGTCGTTCCTATTGTTTGAGAAAGCAAATGACTGTAAGGCGGCTATTGCGCGAAGCTGGAGGAAACTCTAGTGTTCCTTATTATCCTTACAAAGAAATAGAGCGAGCCACTAATTCTTTCTCTGAGAAACAAAGGTTAGGAACCGGTGCATTTGGTACAGTTTATGCTGGAAAACTCCACAATGATGAGTGGGTTGCcatcaaaaaaataaagcaCAGAGACACCAACAGCGTTGACCAAGTCATGAACGAGATCAAGCTTCTTTCTTCTGTGAGTCATCCAAATCTAGTTCGTCTCTTGGGTTGCTGCATAGAGGAAGGCGAACAAATACTTGTCTATGAGTTTATGCCCAATGGAACACTGTCTCAGCATTTACAGAGAGAGAGGGGTAAGGGACTTCCATGGACAATTCGTCTCACTATTGCCACTGAAACTGCTAATGCTATAGCTTATCTCCATTCTGCTAATGATCCCCCAATCTATCACAGAGACATCAAATCCAGTAATATACTCTTGGATTATAACTTCAACTCCAAAGTGGCAGACTTTGGGCTTTCAAGACTAGGCATGGCCGAAATATCTCATATCTCAACTGCCCCACAAGGGACTCCAGGCTATGTGGATCCTGAGTACCACCAGAACTACCATCTTTCTGATAAAAGTgatgtttacagttttggggtgGTTCTGGTAGAGATAATAACAGCCCTGAAAGTGGTTGATTTTGGGAGACCTCAGAGTGAGGTTAATCTGGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTGTGTGGATGACATCATAGACCCTTTCTTGGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTGGCTTTTCATAGTGAGATGAGGCCTACTATGATGGAGGTGGCAGAGGAGCTAGACTACATTAAACGCAGTGGATGGGCCACAATGGAGGAAGGCATATGCAGCGCATCATCTGTTGATGGAGGAAGTGAGGATTCAGTGAATGGTACTAATACTGGTATTGTTCATGTGAAGAAAGAAGGAGTAGAGAGTGAGAGATTGATTGTTGCAGAGAGGGCAGATAGTTTTGTACATTCTGTGGAGGCAGAGGAGAAGGATAACTCCCCTGTGTCGGTGCACGATCCTTGGTTAAGTGGACACAGCTCACCTTCATCAAACAGCTTGTTGGGAAATGTAGCTCAATGA 2055 0.4516 MVYSTRAQNKSTCERNCGIHSLPYPFGFSEDCEIKLNCNNSTNQMQIGEFQVQNVTSSSILINLPAKCNRSLQSMEPLFATNFAPTRNNSLLVQNCTSPLGGCVIPTSSFMTNQVELEGCDQRSDNISCFTQGQESVNQDVVSFDDVNKSGCRFLFSSIAIEQTKEREPQVVLQFQMLELGWWLQGSCEQCSPTANCTTVSIPDGKFGFRCQCPEGYVGDGFTNGAGCRRSGSECNASTLTSGGCGGATKIGVLVGGITAGAFIMAVLCILGYYARRRSYCLRKQMTVRRLLREAGGNSSVPYYPYKEIERATNSFSEKQRLGTGAFGTVYAGKLHNDEWVAIKKIKHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEFMPNGTLSQHLQRERGKGLPWTIRLTIATETANAIAYLHSANDPPIYHRDIKSSNILLDYNFNSKVADFGLSRLGMAEISHISTAPQGTPGYVDPEYHQNYHLSDKSDVYSFGVVLVEIITALKVVDFGRPQSEVNLAALAVDRIRRGCVDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSEMRPTMMEVAEELDYIKRSGWATMEEGICSASSVDGGSEDSVNGTNTGIVHVKKEGVESERLIVAERADSFVHSVEAEEKDNSPVSVHDPWLSGHSSPSSNSLLGNVAQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3750 684 CDD STKc_IRAK 322 589 - -
Sto6g3750 684 Pfam Protein tyrosine and serine/threonine kinase 319 588 IPR001245 GO:0004672|GO:0006468
Sto6g3750 684 ProSiteProfiles Protein kinase domain profile. 316 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3750 684 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 9 624 - -
Sto6g3750 684 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524
Sto6g3750 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Sto6g3750 684 MobiDBLite consensus disorder prediction 649 684 - -
Sto6g3750 684 SUPERFAMILY Protein kinase-like (PK-like) 298 588 IPR011009 -
Sto6g3750 684 Gene3D Transferase(Phosphotransferase) domain 1 392 604 - -
Sto6g3750 684 Gene3D Laminin 182 225 - -
Sto6g3750 684 MobiDBLite consensus disorder prediction 664 684 - -
Sto6g3750 684 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 9 624 IPR045274 GO:0007166
Sto6g3750 684 SMART serkin_6 316 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3750 684 Gene3D Phosphorylase Kinase; domain 1 279 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3750 Sto-Chr6 42339079 42342157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3750 13 684 Receptor kinase-like Gene Family AT2G23450 56.765 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sto6g3750 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3750 - - gmx:100793114 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3750 6 42339079 42342157 Sto11g1600 11 15039822 15043557 CCT