Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3737 ATGTATGGGAACAAATGGGCTATGATTGCGAAGCTGTTTCCTGGGAGGACTGATAATGCAGTGAAGAATCATTGGCATGTGATAATGTCTAGGAAGCAGAGAGAGCaatccaataataataatgaaaatattagtGGACTTGATGAGAAAAGTATTCCTAGGAATAAAATACCAGTAGCAGTTAATGCTGACATGCCTTTTAGTGGTCTAACAACATTTGGAggatcattttttttatcaaagttCCAATGTTCTCAATTGCCACACCCAcTTCTAGATGCAATCACATTTGTGGACACCCCTGGTGTTATATCTGGAGAGAAACAGAGGACTCAACGTAGTTATGATTTCAGTGGTGTTATTTCTTGGTTCGCAGCCAAATGTGATCTTATTCTCCTTCTTTTTGATCCTCATCAACTTGATATCAGAGATGAATTTAAACGTGTAATTGCATCTTTACGTGGTCACATTGACGAAATCCGAATGGTTTTGAATAAACAGACCAAGTTGATATTGAACAAGTTCAAAGGGAGTTTCTTTCACCTGCCTCCTGGTGATTTTCCCAATGTGGAGCACTTCAGGGAAGTTTTAAAGAATGGTAATAGCATTGATAAATTTGAAAAGTTGAAGCCTAAATTGATTCAAGCTGTAGATAACACATGTATATGA 669 0.3558 MYGNKWAMIAKLFPGRTDNAVKNHWHVIMSRKQREQSNNNNENISGLDEKSIPRNKIPVAVNADMPFSGLTTFGGSFFLSKFQCSQLPHPLLDAITFVDTPGVISGEKQRTQRSYDFSGVISWFAAKCDLILLLFDPHQLDIRDEFKRVIASLRGHIDEIRMVLNKQTKLILNKFKGSFFHLPPGDFPNVEHFREVLKNGNSIDKFEKLKPKLIQAVDNTCI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3737 222 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Sto6g3737 222 CDD SANT 2 26 IPR001005 -
Sto6g3737 222 Pfam Myb-like DNA-binding domain 2 27 IPR001005 -
Sto6g3737 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sto6g3737 222 Gene3D - 7 174 IPR027417 -
Sto6g3737 222 PANTHER EH DOMAIN 44 168 - -
Sto6g3737 222 PANTHER EH DOMAIN 179 219 - -
Sto6g3737 222 Pfam Domain of unknown function (DUF5600) 162 219 IPR040990 -
Sto6g3737 222 PANTHER EH DOMAIN-CONTAINING PROTEIN 2 44 168 - -
Sto6g3737 222 PANTHER EH DOMAIN-CONTAINING PROTEIN 2 179 219 - -
Sto6g3737 222 ProSiteProfiles Myb-like domain profile. 1 29 IPR001005 -
Sto6g3737 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 167 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3737 Sto-Chr6 42260445 42262548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3737 149 219 EF-hand Containing Proteins AT3G20290 49.351 2.00e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto6g3737 DUF5600 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3737 K12483 - gmx:100786047 196.052