Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3722 ATGTCATCATCGAATTCTCCGTGCGCTGCGTGCAAGTTTCTGAGGCGGAAATGCACGCAAGAATGCGTGTACGCACCGTACTTCCCACCGGACAACCCACAGAGGTTCGCTTACGTCCACAAGGTTTTCGGCGCAAGCAATGTGGCTAAGCTTCTCAATGAGCTTAACGCCGCTCAGCGTGACGACGCCGTCAAGTCTCTCGCCTACGAAGCCGAGGCTCGTCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCCATCCTCCAGCACAGGCTGAGGCAGATCCAAGTGGAACTCAACAATGCGAAGAAGGAGCTTGCAACGTATATCGGACCTCAGGCTCTGCAGCCTATGCCTCCTACGATTTTGACACCTGGAGTTCTCCCTCAACAGCATCCCGGAAACCCATATTCTTCTACTGCCTATTCCTACAACAACATGCCGCCGCCTCCGCCTATGGCGAATATTCCGACGGGTGCGTCTTCGCATAGTGGCCAGCTCTTGATTCGTGACCCGCAGCAGCAGCACCAACACCCTTCGCAGCAACATCAGATCTTGGATGCTCAGCAGTTGGCTGTGGCTGTGGCGGCGAGAGAGCAGCAGGATATGTTTCGTGGTTATGAGCAGCAGCAGCAACAGCAAGAGTTTATGAGGTTCAATAGTGGATACGAAGTGGGTTCTGTTTCTGGAAATGGATTTAACAATCAGATTTCTACTGCTGCTGCCCCCTCCGAGATTGACATGTCCCCATCCTTGGCTTTAGGCTCCTTTGATAGCCCTTACCAAATGCAACCACAGCATCAGCTTCAGGCACAGCTTATGCTTTCACCCCAGCAACCGCAACCGCAGCAACAAACCCAGCAGTCACAGCAACCGCACCCACAACAGTCAGAAAGCGAGGAGGCTAGGAGTGGCATCGACCTCTCTTGTGAATTCTGTGAAGTTGAGAAAAAAAGGATAATCGTAGCAGCACTTGCGTCATCCTCATCTCCATTTTCTCATGTTAGAGATCCTATACCTGATGCAAGAGCTCCATGGACTGTCATGTATTCCACTGCCTGCATGTCTTCAACATCTTCTGCTATTTGTGGCGTCAATGGCTGCAAATTCTCTAGCAAAGACTTCAAAGCAGGTGCTGGCATGGCAACATCCATAATTGACACCATATTCTGCCGCCCCTGCCCTGATAACATTTGTATGACTCCATTAACATCCACAGCCCCAGAAATTGAACATGCATTTGAAGTAGGCCCAACTGGTGCCATTCGGAAAGGAAGACTAATGGAGTGTAGAGCAGCAGCATATACTGCACTTGAGTGA 1323 0.5102 MSSSNSPCAACKFLRRKCTQECVYAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISILQHRLRQIQVELNNAKKELATYIGPQALQPMPPTILTPGVLPQQHPGNPYSSTAYSYNNMPPPPPMANIPTGASSHSGQLLIRDPQQQHQHPSQQHQILDAQQLAVAVAAREQQDMFRGYEQQQQQQEFMRFNSGYEVGSVSGNGFNNQISTAAAPSEIDMSPSLALGSFDSPYQMQPQHQLQAQLMLSPQQPQPQQQTQQSQQPHPQQSESEEARSGIDLSCEFCEVEKKRIIVAALASSSSPFSHVRDPIPDARAPWTVMYSTACMSSTSSAICGVNGCKFSSKDFKAGAGMATSIIDTIFCRPCPDNICMTPLTSTAPEIEHAFEVGPTGAIRKGRLMECRAAAYTALE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3722 440 MobiDBLite consensus disorder prediction 276 303 - -
Sto6g3722 440 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Sto6g3722 440 Coils Coil 86 106 - -
Sto6g3722 440 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Sto6g3722 440 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 287 - -
Sto6g3722 440 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3722 Sto-Chr6 42160496 42168545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3722 1 261 AS2 family AT5G66870 52.297 6.12e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto6g3722 LOB 1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3722 - - gmx:102664012 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1622 11 15190013 15196395 Sto6g3722 6 42160496 42168545 CCT