Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3705 ATGATATCAATCGCAAGAAATAAGGGAATCGCTAAAATATTCGAGATTCGAAGACAGAGGAGGAGGCGAGTTGGGAGAGAGAATAATGAATTGAATGGTGTGAAACGTACCTCACTTTTGCTACGACATATTGAGCGAGAAAGAATTGGTGTTTGTGTTGGGTTGAGAATTGAGATGGTGGTGGGTGCGGGTCATGGTAAGAGCCGCGCATTAGTGGATCGGGCGGACAAACGAAATAAGACAGTGGAGAATCAATACAAGCTCTTGAACCTTCAGAAAATTAATTTGGATTCTGTAACCAAGCAAGCCGCATCTGATCATTCTCAAAAGTCGGCGAGCTCCATTAAGGTTGCAACAGAGAGGGCATTATCTCCAGGCGAGGCCAGGTCATCTGCTGTGATTAAGGCAGAGAGTGTTCGATCAAAGTTAGAATCAAAATTCCCTAGCTTTGTGAAGTCATTAGTCAGATCACATGTTGCTGGTTGTTTTTGGATGGGACTCCCTGCGTTGTTCTGTAAAAGATACTTGCCAGATAAAGATGTAACCATTACTTTGGAAGATGAATCTGGTAAAGAATACCAGTCGAAATACATTGCATACAAGACAGGGTTAAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGAGATGTCTTGGTCTTCCAATTAGTTCAACCTACTAAATTTAAGgTACTTATAATAAGAGCTAACGACCTGAGTGAATTGGATGGGGCTCTTTCTCATATGAATCTGGACAGTCATGCAAAACGTAAAGAGAAAGGCAAGCCTTGTATCCTAGACTCTTCTGACATTCACGAATGCAGTCTGCAGAACAATCTgaatatgaaagtgatgaagTCAGTTCAGAAGTACTGGAGGGTTTTGCAACAGGAGGCCTTAAATTCAGTGATGTAA 927 0.4142 MISIARNKGIAKIFEIRRQRRRRVGRENNELNGVKRTSLLLRHIERERIGVCVGLRIEMVVGAGHGKSRALVDRADKRNKTVENQYKLLNLQKINLDSVTKQAASDHSQKSASSIKVATERALSPGEARSSAVIKAESVRSKLESKFPSFVKSLVRSHVAGCFWMGLPALFCKRYLPDKDVTITLEDESGKEYQSKYIAYKTGLSAGWRQFSAVHKLQEGDVLVFQLVQPTKFKVLIIRANDLSELDGALSHMNLDSHAKRKEKGKPCILDSSDIHECSLQNNLNMKVMKSVQKYWRVLQQEALNSVM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3705 308 ProSiteProfiles B3 DNA-binding domain profile. 150 241 IPR003340 GO:0003677
Sto6g3705 308 SMART B3_2 150 241 IPR003340 GO:0003677
Sto6g3705 308 Coils Coil 72 92 - -
Sto6g3705 308 Pfam B3 DNA binding domain 150 240 IPR003340 GO:0003677
Sto6g3705 308 Gene3D - 128 244 IPR015300 -
Sto6g3705 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 73 262 IPR044837 -
Sto6g3705 308 SUPERFAMILY DNA-binding pseudobarrel domain 143 241 IPR015300 -
Sto6g3705 308 CDD B3_DNA 148 239 IPR003340 GO:0003677
Sto6g3705 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 73 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3705 Sto-Chr6 42031668 42037098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3705 121 263 B3 DNA Binding Superfamily AT3G19184 44.755 7.41e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto6g3705 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3705 - - ahf:112798347 253.062