Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3702 ATGATGTCGCAAAGATCGGCGCCGGCGCCGTTTCTGACGAAGACGTACGAGCTGGTGGATGATGGTGCGACGGACGAGGTGATATCGTGGGGTGAAAGTGGGAAGACGTTTGTTGTGTGGAAGCATGCGGATTTTGCTAAGGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCAAGCTTTGTTCGCCAGCTTAACACCTATGGATTCCGAAAGATGGCTCCTGACAAATGGGAATTCGCGAACGAATACTTCAAAAGAGGAGAGAAGGAGCTGGTGGGGGAGATCAAACGGCGGAAAACGGTGGGCGGAAAAGCCGGGGGGCGATGCAACTCTGGATCGAACTCGGGGGGCGGGGATGAAATGAGGTCGACGTCGTCATCGTGGGATTGGAAGAAGGGGGGAAGCGTAGAGAGGAGTAATAATCCAGAAATAGATATAGCGAACCTGACGGGGGAGAACGAGAAACTGAAGAAGGATAACGAAATGCTGAGCTGGGAACTGGCGCAGGCGAAGAAGCAGTGCGATGAACTAGTGGGGTTTCTGACGGAATACGTGAAGGTGGGGGCGGATGAGATAGATGGGATGATGCGGCAAGGAAGTATTGGGTCCACCCGTAAAAACAATGAGGAAAGCGCGGTAGGAGAGGGGGAAATTAGCTTGAAACTCTTTGGGGTTTGGTTGAGAGGacagaaggagaaggagaaagagAACATCTCCAAGTCCAAGAGAGGGCGCGATGACCAAATGTCTTGTGGGGGGCCTCAGCCTCAAACTAAGCACCTCAAAACTCTTCCTCTCATTATCAATTGA 816 0.5025 MMSQRSAPAPFLTKTYELVDDGATDEVISWGESGKTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKMAPDKWEFANEYFKRGEKELVGEIKRRKTVGGKAGGRCNSGSNSGGGDEMRSTSSSWDWKKGGSVERSNNPEIDIANLTGENEKLKKDNEMLSWELAQAKKQCDELVGFLTEYVKVGADEIDGMMRQGSIGSTRKNNEESAVGEGEISLKLFGVWLRGQKEKEKENISKSKRGRDDQMSCGGPQPQTKHLKTLPLIIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3702 271 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3702 271 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3702 271 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3702 271 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3702 271 MobiDBLite consensus disorder prediction 109 136 - -
Sto6g3702 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 3 261 - -
Sto6g3702 271 MobiDBLite consensus disorder prediction 104 143 - -
Sto6g3702 271 Gene3D - 3 102 IPR036388 -
Sto6g3702 271 SUPERFAMILY "Winged helix" DNA-binding domain 7 100 IPR036390 -
Sto6g3702 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 261 IPR027725 -
Sto6g3702 271 MobiDBLite consensus disorder prediction 234 271 - -
Sto6g3702 271 Coils Coil 148 175 - -
Sto6g3702 271 MobiDBLite consensus disorder prediction 234 249 - -
Sto6g3702 271 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3702 271 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3702 Sto-Chr6 42014200 42015811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3702 3 235 HSF AT4G36990 54.618 8.11e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto6g3702 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3702 K09419 - gmx:100783832 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3702 6 42014200 42015811 Sto11g1650 11 15432950 15435134 CCT