Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3696 ATGGAGCAGAGAAAGCTTGTGGTTCTGGGTATTCCTTGGGAAGTCGATACTGAGGGGTTGAGAGACTATATGACCAAATTCGGTGAGTTGGAAGATTGTATTGTCATGAAGGAGAGGTCGACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAATTGATGATGCTAAGAATGCATTATCTAGTGAACATATTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAAAAAGTTACAAGAATTTTTGTAGCCAGGATTCCCCAATCTGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTATACATGCCAAAGGACCAAGGCTCAAAAATGCATCGTGGAATAGGCTTTGTCACTTTTGAAAGTGCAGAATCTGTAGAGAACCTGATGTCAGAAACACATGAACTTGGAGGGTCTACTGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGACTTCAGGCCAAGTGGCAGAATGACACAAGGAGGATATGGTGCATATAATGCATATATTTCTGCAGCAACTAGATATGCTGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCTCACTCTATGGAAGGGCACAACCTGCTCGAGGAATGggcaaaaaaatttttgttggcCGTCTACCCCCAGAGGCAACAGCGGAGGATCTTCGCCAGTATTTTGGCCGATTTGGCCATATAGTAGATGTTTATGTTCCTAAGGATCCTAAGAGATCTGGTCATAGAGGTTTCGGTTTTGTCACTTTTGCTGAAGAAGGTGTGGCAGAACGTATCTCTCGAAGGTCACATGAGATTTGTGGACATGAGGTGGCAATAGATTCAGCCACACCTCTTGATGATGCTGGGCCCAGTAATAATTTTATGATGAATACTGTAGATTCGTATGGCAGCGGGTATGGTGGTCCCATGCGCACCTATGGGAGGATGTATGGTAGCCTAGACTTTGATGATTGGGGTTATGGAATGGGCGGAGGTAGACCATCAAGATCCGATTGGAGGTATAGGCCATACTAG 1083 0.4377 MEQRKLVVLGIPWEVDTEGLRDYMTKFGELEDCIVMKERSTGRSRGFGYVTFASIDDAKNALSSEHILGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFVTFESAESVENLMSETHELGGSTVVVDRATPKEDDFRPSGRMTQGGYGAYNAYISAATRYAALGAPTLYDHPGSLYGRAQPARGMGKKIFVGRLPPEATAEDLRQYFGRFGHIVDVYVPKDPKRSGHRGFGFVTFAEEGVAERISRRSHEICGHEVAIDSATPLDDAGPSNNFMMNTVDSYGSGYGGPMRTYGRMYGSLDFDDWGYGMGGGRPSRSDWRYRPY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3696 360 Gene3D - 222 304 IPR012677 -
Sto6g3696 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Sto6g3696 360 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Sto6g3696 360 Gene3D - 84 194 IPR012677 -
Sto6g3696 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Sto6g3696 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 66 IPR000504 GO:0003723
Sto6g3696 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 283 IPR000504 GO:0003723
Sto6g3696 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Sto6g3696 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Sto6g3696 360 PANTHER OS01G0945800 PROTEIN 3 360 - -
Sto6g3696 360 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Sto6g3696 360 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 360 - -
Sto6g3696 360 Gene3D - 1 83 IPR012677 -
Sto6g3696 360 SMART rrm1_1 93 164 IPR000504 GO:0003723
Sto6g3696 360 SMART rrm1_1 225 296 IPR000504 GO:0003723
Sto6g3696 360 SMART rrm1_1 5 76 IPR000504 GO:0003723
Sto6g3696 360 CDD RRM2_TDP43 224 299 - -
Sto6g3696 360 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3696 Sto-Chr6 41968226 41972840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3696 6 277 Eukaryotic Initiation Factors Gene Family AT2G36660 24.638 3.17e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3696 K14411 - qsu:112035746 658.292