Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3688 ATGGCGGATGAACAGGCTTCAACAGCCGCGAGACAAAGGGGAAGAGGAGCCGAGGCATCGGCGCGTTCCCAAGCACTGGAACATGCCGATGGATACCAAATTAAGTTGGAAAACCCTATTTATGATACGGTCGCTGAGGATGAGTACAATGCTCTCGTCGCCAAGCGCCGCGAACAAGCCCGACATTTCATCGTTGACGACGACGGTCTTGGGTACGGGGACGAAGGTGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACTCTCTCATCTGATGAATCTGACGGAGAATCAGAAAGGCCCAAAAGGAAGAAAGTAGAAAAGAAAGATCCGCAACCTAAAAAGTCATCTTCTTCGCTTTCAGCTGCGGCGGCGATGATGGGGGCGCAGAAATTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAGGCTAAAGGATTTTCCTGTGATAGTATCGTAGATGATGTTATTGCGGAGTTTGCACCGGATGAGACTGACAGACTTAGGCGCAGAAGAGGGCAAACAAATCCCTCATCTGGTGCCAATGACACTCTGCCGATTAATAATGTTAAGAGCGAGGAACCATTAATTGGGTGTCCCGATCCAATGGGAGGTGTTTTGTTGTCTGATTCTGTCTCAAATGGTGATCATGAATCGACCAGAGCTATTGATATTAATAATGATGGTTGTGCCTTGGGTTCTGAGCAAAACTACGGAGGAGTAAGTGAAGAGGCATCGGTTAAAGAATCAGAAGGAGGAAAAGGTTTTAATTCTGAAAATGGCCAGGCATCAAAAATACTAACGCATGATGATCCAACTAACAGAAATGTGGTTGAGGAGAAAATGCCAAAGGATACTAAAATAGAAGCTAAACCAACGGTGGAGAAGAAGGTCTTTACTCTGAATGCAAAACTTGAAGAAGAGGACCCGGCCTTGAGCGCGACTGCTGGTTGGCAGGCAGCGAGGAGTGGAGGGGACGTCTATGTCGCAGATTCAAAGGTGGCCAATGAAGCTCTAAATAGTGAAGAAAACTTGGAGCTTAATCAAGATGGCTCGCTGTCTTTCTACATACTTGATGCTCATGAAGAGTTCAATAGAGATAATATGGGCAACCTATATTTGTTTGGGAAGGTCAAAGCAGGTAAATCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCTATTCCAAATCATCCTTTACATTACACTGACGAGATGATGAAGCTTGACAAGGATGTTGAAGAGTCCCGGATTTCACCTACAGACTGTCATAAAAAGCAGCAAGATATGGTGTCTGGTTTAAAGAATGAGATAGCAAAACAACTATTAGATCTGAACGTTTCAACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAGCGATCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCCTTCAAGGATCCACCCCTTCCAGTGGACCTAAAAGGAGAGAGTTTCTGTGCTCTTCTAGGAACGCATCGCAGTGCATTGGAGCTTTTTCTTATTAAAAGGAAGATAAAGGGGCCTTCTTGGCTACAGCTTTTCAACTTTTCTACTCGCTTGGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGAGTCTCCTAAAGACATAAGAATATCAGAGTCCAGTGACTCCAGTGTTGAGATTCCTCCAGTGGTTGCCACAGCTGTAAATTTGAAAACCACCATAAATGAAAAACAAAGCATAAATGAGGTTGTCTCTGCATCCATTGTTTGCTGCCGCGAGGCCAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTGACCCATTTTACCGTTGTTCGTAAGCTTGATGGAGGCATATTTCCATTAGGATTTATTAAGGAGGTCACGGACCGGAACACAAGAGCTGGCTCAAATGTTCTCTGTGTTGAAAGCAGTGAAAGGGCTTTGCTAATCCGCCTAATGATAGAATTACATAAATTGGATAGTGATATTCTTGTTGGACATAACATTTCCGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGGCTTGCAAAGTGCCAAACAACATGTGGTCCAAAATAGGCCGCCTTAAGAGGTCCGTGATGCCTCCTAAACTTTCCAGAGTAAGCTCTGTTTTTGGGTCTGGAGCTACTCCTGGGATCATGTCTTGTGTTGCGGGTCGGCTTCTTTGTGATACGTACTTGTGTGCTCGTGACCTACTAAAGGAGGTTAGCTACTCGTTAACTCAACTTGCAAATACCCAGCTGAACAAAGTTCGGAAGGAAGTTGCTCCAAATGATGTTTCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAATATGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCAAGAGCACAGAGGGTGGAGTATCTTTTGTTGCATGCTTTCcatgaaaagaaatatattgtGCCAGACAAGATTCCTTCCCACACAAAAGATACAAAATTGACGAAACGCAGAGTAACTCGTGGTGTTGATGATGGCAACCTTGATGAAGCAGATATTGATAATACAAACTATGACAACCACGTTCCTGACAGTGAtcacaagaaaaacaaaaagggtCCATCCTATGCTGGAGGTCTAGTTTTGGAGCCAAAGAGGGGTTTATATGACAAATATATATTGCTTTTAGACTTCAATAGTCTTTATCCCTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTAGAAAGATCTTCAGATGGATCTTTTCCTCGTCTTCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAATATTTGGTTAATAAAAGGAGAGATATAAAGAAGGAAATGATGAAGACTGCATCTGGCCTTAAATTACAGCAACTGGACGTTCGGCAACAAGCACTAAAGCTTACTGCAAATAGTATGTACGGATGCCTGGGGTTTGCTAATTCAAGATTTTATGCAAAGCCACTAGCAGAGCTTATAACCCTGCAAGGAAGGGAGATACTACAGAGTACCGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGAAAGCAAAAGCAATCGCTTGGAAAGTTATTAAAGAGGTCAACAAGAAATATAGATGCTTGGAAATTGATTTAGATGGTTTGTACAAGAGAATGCTACtacttaagaaaaagaaatacgCAGCTGTCAAGGTGCAGTTCAAAGATCGCACGCCATACGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCCCATTGTCTAAAGATATAGGAGATTTTTGCCTAAATCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTTGAATCAATTCACAGCTGCCTCCGGAAGGTGCAAGAAGAGATGAGGAGTGGACAGGTACCGCTAGAGAAATATATCATCACTAAAACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAAAGATTGAAGCAAAAGGGTTACTCCACTGGTTGCTCTGTTGGTGATACGATCCCCTATATAATTTGCTACGAGCAGGGCAGTAGTTCAGGCGGTGTAACAGGCATTGCTCAGCGTGCTAGATATCCTGAGGAACTAAAACAAGAACAAGGGCAATGGATGATTGACATTGATTACTACTTGTCACAACAGATTCATCCTGTTGTATCGCGTCTTTGTGCATCCATTCAGGGCACGAGCCCAGCAAGACTGGCTGATTGTTTAGGGCTTGATGCatcaaaaTTTCAACATAAATCAAGTGAAGCCTTCAATGGTGATCCTTCAAGCTCACTCTTCTTCGCAGCTGATGACGAGGAGAGGTATCATGGATGTGAGCCGTTGGTCTTGTCATGTCCTAGCTGCTCTGGTACTTTTGACTGCTCATCTATCTTCAAATCTATTTGTTCCTCCAGAAGTGAAAAGCCAACAAGCTCAGGAATAGAGTCAAACCATGATTTCTGGCATAAGCTGCGCTGTCCCAAATGCCCAGAAGAAGATGGCGTAGGCAGAATTTCTCCTGCAATGATAGCCAATCagGTTAAAAGGCAAGCGGATAAGTTTGTTTCAATGTACTACAAAGGCTTATTAATGTGTGATGATGAAACATGCAATAATGCAACACGAAGTATCAACCTTCGTGTGGTTGGTGATGCTGAAAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGACACCTTCAAAGAAAGTACACGGAGGCAGACTTATATAAACAACTCTCGTATTTTTGCCATGTGTTGGATACTGTTTCCTATATAGAAAAGTTGGAGGCAAAATCTAGGATATCAGTAGAGAAAGAGTTGGCCAAAATTAGACCGATGGTTGATCTGGCATCATCAACAGTACAAAAGATTCGGGACCGTTGTGCCTATGGTTGGGTGCAACTGCGGGATTTAGTCATTactgtatga 4635 0.4231 MADEQASTAARQRGRGAEASARSQALEHADGYQIKLENPIYDTVAEDEYNALVAKRREQARHFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGESERPKRKKVEKKDPQPKKSSSSLSAAAAMMGAQKLSSMFTSSVFKKSRDDKAKGFSCDSIVDDVIAEFAPDETDRLRRRRGQTNPSSGANDTLPINNVKSEEPLIGCPDPMGGVLLSDSVSNGDHESTRAIDINNDGCALGSEQNYGGVSEEASVKESEGGKGFNSENGQASKILTHDDPTNRNVVEEKMPKDTKIEAKPTVEKKVFTLNAKLEEEDPALSATAGWQAARSGGDVYVADSKVANEALNSEENLELNQDGSLSFYILDAHEEFNRDNMGNLYLFGKVKAGKSYQSCCVVVKNMQRCVYAIPNHPLHYTDEMMKLDKDVEESRISPTDCHKKQQDMVSGLKNEIAKQLLDLNVSTFSMAPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPVDLKGESFCALLGTHRSALELFLIKRKIKGPSWLQLFNFSTRLASQRVSWCKFEVIVESPKDIRISESSDSSVEIPPVVATAVNLKTTINEKQSINEVVSASIVCCREAKIDTPMLASEWKRPGMLTHFTVVRKLDGGIFPLGFIKEVTDRNTRAGSNVLCVESSERALLIRLMIELHKLDSDILVGHNISGFDLDVLLHRCQACKVPNNMWSKIGRLKRSVMPPKLSRVSSVFGSGATPGIMSCVAGRLLCDTYLCARDLLKEVSYSLTQLANTQLNKVRKEVAPNDVSKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHEKKYIVPDKIPSHTKDTKLTKRRVTRGVDDGNLDEADIDNTNYDNHVPDSDHKKNKKGPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTTGVLPELLKYLVNKRRDIKKEMMKTASGLKLQQLDVRQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEKAKAIAWKVIKEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDRTPYEVIERKGLDIVRRDWSPLSKDIGDFCLNQILSGGSCEDVVESIHSCLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDTIPYIICYEQGSSSGGVTGIAQRARYPEELKQEQGQWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLADCLGLDASKFQHKSSEAFNGDPSSSLFFAADDEERYHGCEPLVLSCPSCSGTFDCSSIFKSICSSRSEKPTSSGIESNHDFWHKLRCPKCPEEDGVGRISPAMIANQVKRQADKFVSMYYKGLLMCDDETCNNATRSINLRVVGDAERGTVCPNYPRCNGHLQRKYTEADLYKQLSYFCHVLDTVSYIEKLEAKSRISVEKELAKIRPMVDLASSTVQKIRDRCAYGWVQLRDLVITV 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3688 1544 MobiDBLite consensus disorder prediction 257 273 - -
Sto6g3688 1544 Pfam DNA polymerase family B 832 1296 IPR006134 GO:0000166|GO:0003677
Sto6g3688 1544 MobiDBLite consensus disorder prediction 884 912 - -
Sto6g3688 1544 PANTHER DNA POLYMERASE 334 1542 - -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 173 192 - -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 92 113 - -
Sto6g3688 1544 TIGRFAM pol2: DNA polymerase (pol2) 39 1294 - -
Sto6g3688 1544 Gene3D - 1140 1325 IPR042087 -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 67 125 - -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 1 33 - -
Sto6g3688 1544 SUPERFAMILY Ribonuclease H-like 353 861 IPR012337 -
Sto6g3688 1544 CDD DNA_polB_alpha_exo 572 824 - -
Sto6g3688 1544 Pfam DNA Polymerase alpha zinc finger 1336 1540 IPR015088 GO:0003887|GO:0006260
Sto6g3688 1544 Gene3D - 572 886 IPR036397 GO:0003676
Sto6g3688 1544 MobiDBLite consensus disorder prediction 252 273 - -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 178 192 - -
Sto6g3688 1544 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 334 1542 - -
Sto6g3688 1544 SUPERFAMILY DNA/RNA polymerases 857 1311 IPR043502 -
Sto6g3688 1544 Pfam DNA polymerase family B, exonuclease domain 387 766 IPR006133 -
Sto6g3688 1544 CDD POLBc_alpha 908 1312 IPR045846 GO:0003887|GO:1902975
Sto6g3688 1544 Gene3D - 399 525 - -
Sto6g3688 1544 Gene3D Helix hairpin bin 973 1025 - -
Sto6g3688 1544 Gene3D DNA Polymerase alpha, zinc finger 1335 1529 IPR038256 -
Sto6g3688 1544 MobiDBLite consensus disorder prediction 884 915 - -
Sto6g3688 1544 Coils Coil 1090 1110 - -
Sto6g3688 1544 SMART polmehr3 572 1076 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto6g3688 1544 Pfam DNA polymerase alpha subunit p180 N terminal 21 81 IPR024647 -
Sto6g3688 1544 Gene3D - 359 558 - -
Sto6g3688 1544 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto6g3688 1544 PRINTS DNA-directed DNA-polymerase family B signature 1009 1021 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto6g3688 1544 PRINTS DNA-directed DNA-polymerase family B signature 1062 1070 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto6g3688 1544 Gene3D Palm domain of DNA polymerase 914 1120 IPR023211 -
Sto6g3688 1544 ProSitePatterns DNA polymerase family B signature. 1064 1072 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3688 Sto-Chr6 41900874 41913063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3688 1 1542 Core DNA Replication Machinery Family AT5G67100 59.975 0.0 1828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3688 K02320 - zju:107424534 2187.92