Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3686 ATGTCACTCCCCATGGCCAATGCTCACTTTTCCGCTCGATCATCGCTCTTCCAAGATGCGATCTCCGCCCTTGATTCCTCCGCTTCACCTGACCTTCTTCTCTCGTCTTCCCCAACTTATATGAACCCAAGTTCTGCTGTGAATGTGTCCTCTTCGTCTTTTGGAGTGAGTGAGAATGAGATCGATGAATATGATTGCGAGAGCGAGGAGGGGATTGAAGCATTGGTGGAAGAACAACCGGCAAAGCCAGTTCCTCCTAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAGAAGATGAAGGCATTGCAAAATCTAATTCCAAATTCAAACAAGACGGACAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGTTTGAGTTTGCATCCAATGTGCTTCAGTGAAGGCATGCAGGCTCAAGCAGCTCTGCAATTGTCTCAGATGAGATCCGAGATGGATGAAGAAAACAGGTCTTTTCCTATAAACATGAGTACACCCACTCTGCCTTTGCCCCAAGAAAATCCCTTGCAATATGTATCTAATTCCACTCTACCTAACCAACGCAATGCACGAAACCAAGCATTAGTGCCCTCTCCATCAATTATAATTACCCCAGAAACCTCTTTTGGGCTGGAATACCCCATGCTACCTCATTTAAGACCCTTCCAACTCAACAGAACTTGTGAGATACGTGGGGATGACATATTGCAGCATCAGCAATTAAATGCAAACCATTCAGATACCAATCCTTTAGGAGGTTCTCAAGTATCACTCTCGTTTGATATGCAAACATCCGGACAGAAGGACAAGAGCTATTCGGAAACATGCATTGCAGGAAGAGATCAGTTGGGAGTTATCCTAAGAAATAACGACAACAACTTTACTCTTACCTCACAGTTAAGTAGATTACAGACGGGAAAAAGTGCCTGCAATGACGACCTCAAGAcagaaaaatcaagtttctga 1056 0.4328 MSLPMANAHFSARSSLFQDAISALDSSASPDLLLSSSPTYMNPSSAVNVSSSSFGVSENEIDEYDCESEEGIEALVEEQPAKPVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFSEGMQAQAALQLSQMRSEMDEENRSFPINMSTPTLPLPQENPLQYVSNSTLPNQRNARNQALVPSPSIIITPETSFGLEYPMLPHLRPFQLNRTCEIRGDDILQHQQLNANHSDTNPLGGSQVSLSFDMQTSGQKDKSYSETCIAGRDQLGVILRNNDNNFTLTSQLSRLQTGKSACNDDLKTEKSSF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3686 351 MobiDBLite consensus disorder prediction 78 106 - -
Sto6g3686 351 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 33 279 IPR031066 -
Sto6g3686 351 MobiDBLite consensus disorder prediction 92 106 - -
Sto6g3686 351 Pfam Helix-loop-helix DNA-binding domain 98 144 IPR011598 GO:0046983
Sto6g3686 351 CDD bHLH_AtPIF_like 94 156 - -
Sto6g3686 351 Gene3D - 89 153 IPR036638 GO:0046983
Sto6g3686 351 PANTHER TRANSCRIPTION FACTOR SPATULA 33 279 - -
Sto6g3686 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 154 IPR036638 GO:0046983
Sto6g3686 351 SMART finulus 100 149 IPR011598 GO:0046983
Sto6g3686 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 143 IPR011598 GO:0046983
Sto6g3686 351 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3686 Sto-Chr6 41887872 41890643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3686 59 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.542 1.53e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g3686 HLH 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3686 - - var:108334706 310.457