Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3671 ATGTGGGATCTGAATGACTCGCCCGATCGGAGAAGAAAGGACGAGGAATCCGAAGGCTGTTCTTCCCTCAAGACTTCCATCGAGGGTGAAGATCACGAGAAGGGGAAGCGCGTGGGATCTGTTTCCAATTCAAGCTCATCCGCGGTTCTCATGGAGGAGGGATCCGAAGACGAGGAAGGGGACAGGAAGCGAACCACCAACAAGATATTCGGCTTCTGCGTCACCCAAGACCACTACTCTGACCCACCCGTCACCCGCCAGTTTTTCCCGGTCGATGACGACGACGCTGACGTTGCAGCCGTCTCCGCCTTCCCGAGGGCCCACTGGGTCGGAGTTAAATTCTGCCAGCCCGAGcctgcggcggcggcggcggcggtggctGTGGCGGGTGGTGGCGGAGGGAAATCGGTGGAAGTGGTGTCGCAGCCGATGAAGAAGAGTCGGCGAGGACCAAGGTCGAGGAGCTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCCCATATATGGGATTGTGGAAAGCAAGTGTATCTGGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCATATGATAGAGCGGCCATCAAGTTCCGGGGAGTAGAAGCTGACATTAACTTCAACATAGAGGACTATGAAGAAGACTTGAAGCAGATGAGTAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACAGGGTTTCCGAGAGGCAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGCGGAAGATGGGAGGCTCGAATGGGCcagtttctgggcaaaaaGTACGTTTATCTGGGTTTGTTCGACACCGAGATTGAAGCCGCAAGGGCGTATGACAAAGCCGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTCGATCCCAGCATCTACGAGAACGAGCTTAATTCTGAATCCTCGGGTAACGCTGCAGATCACAATCTGGATTTAAGTTTGGGGAATTCGAGCTCAAAGCACGGGAATAGTCAAACATTGGGGATTGATACACATACCCCAAATACTGCTGCAATTGATCACCACATGCCACCTGCAGATTGGAGGAACAATGGGGGATTTAGGCATAATAAGCTGAATGTGGTAGCAGAACAATGTAATAATAGAGATCGTGGGCAGGGGGAGAGCGAAGGGATGAGGCTTTTGAGTCAAACCCACCTTCATTCTCCAGCAGCAGCAGCTAAAGAAATGCAAAGATATGGAGCCTACAGGGCATCTGGAGACCCTCAAATGCTTCACAATTTTGCTCCTTCACACCTTCATCACCAACCAAGTTTTCAAGTGTATCCGATTCCAAGCAGCAGCAATGGAGGAGGGCGTATAGGAAGCGATCTTTCACTGTCAATGAATGATCAGCAAGAGTGGCAACCTCATAATTATTTAGCAAGTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGATCTTCTTCCCAAGCTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCCTGA 1536 0.4909 MWDLNDSPDRRRKDEESEGCSSLKTSIEGEDHEKGKRVGSVSNSSSSAVLMEEGSEDEEGDRKRTTNKIFGFCVTQDHYSDPPVTRQFFPVDDDDADVAAVSAFPRAHWVGVKFCQPEPAAAAAAVAVAGGGGGKSVEVVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNAADHNLDLSLGNSSSKHGNSQTLGIDTHTPNTAAIDHHMPPADWRNNGGFRHNKLNVVAEQCNNRDRGQGESEGMRLLSQTHLHSPAAAAKEMQRYGAYRASGDPQMLHNFAPSHLHHQPSFQVYPIPSSSNGGGRIGSDLSLSMNDQQEWQPHNYLASAAASSGFPPQIRSSSQAWLQKNGFHSLMRPS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3671 511 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 Pfam AP2 domain 248 297 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 MobiDBLite consensus disorder prediction 313 371 - -
Sto6g3671 511 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Sto6g3671 511 MobiDBLite consensus disorder prediction 441 462 - -
Sto6g3671 511 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 MobiDBLite consensus disorder prediction 1 38 - -
Sto6g3671 511 MobiDBLite consensus disorder prediction 444 462 - -
Sto6g3671 511 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Sto6g3671 511 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Sto6g3671 511 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 SUPERFAMILY DNA-binding domain 248 308 IPR016177 GO:0003677
Sto6g3671 511 MobiDBLite consensus disorder prediction 1 63 - -
Sto6g3671 511 MobiDBLite consensus disorder prediction 313 350 - -
Sto6g3671 511 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Sto6g3671 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 509 - -
Sto6g3671 511 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 509 - -
Sto6g3671 511 CDD AP2 157 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3671 Sto-Chr6 41786855 41789479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3671 1 346 AP2-EREBP Transcription Factor Family AT4G36920 69.318 4.86e-141 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto6g3671 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3671 K09284 - gmx:100786333 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3671 6 41786855 41789479 Sto11g1672 11 15596507 15598712 CCT