Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3667 ATGGAAGCAGAAAAGGCTGCTGCATCTAAAACCCGTTGCTTTGCTTTACAGCATCACATGGAAAGCGAAACCTACGCCATAGAAACATCAAAGAAAAGAGGGGTAGTGGAAGGAGAGAGAAGGTACAAGGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGGGAACCCAACAAGCGTTCTAGGATTTGGCTCGGATCCTATTCCACGCCCGTTGCGGCCGCCCGCGCTTACGACACCGCCGTTTTCTACCTCAGGGGACCCTCCGCCCGTCTTAATTTCCCCGACCTTCTCGAAGGGGGCGGTGGGGGTGGCCTCGGCGGCGGGGACATGTCGGCGGCTTCGATTAGGAAGAAAGCCACGGAGGTCGGTGCCAGAGTGGATGCGCTTCAGGCGGCTCTCCACCACCATGCATCGGCGGCGCCTGAGCTCATCTCACGTGGAGGAGGCGGAGGCGGCGCGGGGCAGTTCGTGGAGCGGGTTGATCTTAATAAGATACCGGAACCCGAGAATTCGGACTTCCACAACTTGGTGGTTCCTTCTCCGGTGAGAGCGAGGGTGCTTGCTATGCTAACATTCACTCGCTATGGCTATGGAGGCTGA 612 0.5768 MEAEKAAASKTRCFALQHHMESETYAIETSKKRGVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLEGGGGGGLGGGDMSAASIRKKATEVGARVDALQAALHHHASAAPELISRGGGGGGAGQFVERVDLNKIPEPENSDFHNLVVPSPVRARVLAMLTFTRYGYGG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3667 203 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Sto6g3667 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 20 176 - -
Sto6g3667 203 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 20 176 - -
Sto6g3667 203 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Sto6g3667 203 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3667 Sto-Chr6 41769475 41773740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3667 42 176 AP2-EREBP Transcription Factor Family AT2G23340 66.207 7.73e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto6g3667 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3667 K09286 - gmx:100783682 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3667 6 41769475 41773740 Sto11g1674 11 15616193 15616829 CCT