Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3666 ATGGACGACATGGCTGCCTACTACCCACAAACCCAACCCTCGAGTCTTCATAGTTATCAATATTATCAACATCCTCCTCCGTCATCGCTCGCGGTGGTGCCACCACCTCCTGGTGCGGGTCCTCCCGCGGCCCACCACCTTCCTCCGCAATATGTGGCCTATCAACAACCTATGTTTGCTTCTTACGGCCCTCCTATTCCCCTTCAATATTCCGCCAACGAGGTTCGGACCCTCTTCGTCGCCGGCCTTCCCGAGGACGTCAAGCCTCGCGAAATCTACAATTTGTTTCGAGAGTTTCCCGGTTATGAGTCATCACATCTCCGGAGCCCGACTGACTCCTCGCAGGCTTTTGCTTTTGCTGTATTTGCTAATCAACAGTCTGCAGTCATGGCGATGCATGCCTTAAATGGGATGGTCTTTGACCTAGAGGAGGGGTCAACTCTTTATATTGATCTAGCAAAATCCAACTCTAGATCTAAGCGTACAAGAATAGATGATGAAATAGTTGGCTCAGATAAGAAAGCTAGAGGATCTTCATTTTCAAGGGCAACTCCTGATTCTGGTCTTGGCAGCATACACATGCCGGGAATGGGTAATTCTGCTTACAACACGAACACGTATGGTTATCCATCTGCACAAAGTCAATGGAATATTGATGGTAAAGCTACTAAAGACAGTGTGGGCAATGTGAATAACTCTTCCTCTCATGCTACACAAAATGCGAACCCATGTCCAACTTTATTTGTGGCTAATCTAGGGCCAGCTTGTACCGAACAAGAGCTAAAACAAGTGTTTTCTAGATGTCCTGGATTTCTGAAACTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACAGGAGCTCTAAACAGTCTGCAAGGCACCATTCTTTACTCCTCAACAGCTGGCGAGGGAATGCGGTTAGCATATGCAAAATCACGGATGGGTATGCGGAAGAAGCCAAAGTAA 999 0.4725 MDDMAAYYPQTQPSSLHSYQYYQHPPPSSLAVVPPPPGAGPPAAHHLPPQYVAYQQPMFASYGPPIPLQYSANEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTDSSQAFAFAVFANQQSAVMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFSRATPDSGLGSIHMPGMGNSAYNTNTYGYPSAQSQWNIDGKATKDSVGNVNNSSSHATQNANPCPTLFVANLGPACTEQELKQVFSRCPGFLKLKMQSTYGAPVAFVDFQDVASSTGALNSLQGTILYSSTAGEGMRLAYAKSRMGMRKKPK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3666 332 CDD RRM_RBPMS_like 76 151 - -
Sto6g3666 332 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 318 - -
Sto6g3666 332 MobiDBLite consensus disorder prediction 165 195 - -
Sto6g3666 332 Gene3D - 72 165 IPR012677 -
Sto6g3666 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 310 IPR000504 GO:0003723
Sto6g3666 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 141 IPR000504 GO:0003723
Sto6g3666 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Sto6g3666 332 PANTHER RNA-BINDING PROTEIN-RELATED 1 318 - -
Sto6g3666 332 SMART rrm1_1 246 315 IPR000504 GO:0003723
Sto6g3666 332 SMART rrm1_1 77 151 IPR000504 GO:0003723
Sto6g3666 332 CDD RRM_scw1_like 243 322 - -
Sto6g3666 332 Gene3D - 235 331 IPR012677 -
Sto6g3666 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 155 IPR000504 GO:0003723
Sto6g3666 332 SUPERFAMILY RNA-binding domain, RBD 75 309 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3666 Sto-Chr6 41763855 41768369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3666 62 309 Eukaryotic Initiation Factors Gene Family AT4G34110 21.875 2.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3666 - - gmx:100780983 452.21