Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3612 ATGATATATGCGCATGAACCAGCGCTACTCCTCCGCTTATCGCTAGTGTGCGCCCTCATCGCTTTCCATACGCCGGTTGCGCACCCTCCTAACGTCCGCATCCCCTCCCACCCTATCTCATCCACACCCATCGATACCATCGCCACCCCCCCTACTACCATCCTCCACCGCCGCACCAAACGCAATCATCGTAAGGGCCAGATCTCGGATTCCGCTTGCCCAGCCATGTCCAAGGCGCGTGTCTACACGGATGTCAATGTCCTTCGCCCCAAGGAGTACTGGGATTACGAGGCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTAGGAAGAGGAAAGTATAGTGAGGTGTTTGAAGGCATCAACGTTAATAGCAATGAGCGCTGTATAATTAAGATTCTAAAGCCTGTCAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCACTCAAAAACTCCCAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACAGATTATGACATACGCTATTACATCTATGAGCTCCTTAAGGCCTTGGATTACTGCCACTCTCAAGGCATCATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCCTCAAGatACTTTAAGGGACCTGAACTTTTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATTTTTCGCAAGGAACCGTTCTTTTATGGGCATGACAACCATGACCAGCTTGTCAAGATAGCCAAGGTGCTTGGGACTGATGAATTGAATGCATACTTAAACAAGTATCATTTGGAGCTTGATTCTCAACTTGATGCCCTTGTCGGAAGGCATAGTCGCAAGCCCTGGTCTAAATTTATCAACGCTGATAATCAGCATCTTGTGTCTCCAGAGGCGATTGACTTTCTTGATAAGCTCCTTCGGTACGATCACCAGGACAGGCTAACTGCAAGAGAAGCTATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1227 0.4499 MIYAHEPALLLRLSLVCALIAFHTPVAHPPNVRIPSHPISSTPIDTIATPPTTILHRRTKRNHRKGQISDSACPAMSKARVYTDVNVLRPKEYWDYEALTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDSQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3612 408 SMART serkin_6 109 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3612 408 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 8 408 - -
Sto6g3612 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Sto6g3612 408 SUPERFAMILY Protein kinase-like (PK-like) 82 398 IPR011009 -
Sto6g3612 408 PANTHER CASEIN KINASE II SUBUNIT ALPHA 8 408 IPR045216 GO:0004674|GO:0006468
Sto6g3612 408 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Sto6g3612 408 Pfam Protein kinase domain 109 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3612 408 ProSiteProfiles Protein kinase domain profile. 109 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3612 408 Gene3D Phosphorylase Kinase; domain 1 109 185 - -
Sto6g3612 408 CDD STKc_CK2_alpha 90 394 IPR045216 GO:0004674|GO:0006468
Sto6g3612 408 Gene3D Transferase(Phosphotransferase) domain 1 186 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3612 Sto-Chr6 41352048 41355563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3612 107 397 Core Cell Cycle Gene Families AT3G48750 31.803 1.38e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sto6g3612 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3612 K03097 - gmx:100819679 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3612 6 41352048 41355563 Sto11g1731 11 16114425 16119178 CCT