Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3608 ATGGAACAATTACTCCTTCACTGCGCTAACGCCATCGACACCAACGACTTCACTCTCGCCCAACAAATCCTCTGGGTTCTCAACAACATCGCTCCCCCCGACGGCAACTCCAACCAACGCCTCGCCTCCGCCTTCCTCCGCGCCCTCGCCGCCCGCGCCGCCAAATCCGGCACCTGCAAAATGCTCGCCCACGCTCCCCCCATCCACACCCACACCTTCTCCATCATCGAGCTCGCCAACTTCGTCGACCTCACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAACTCCGCCATCCTCGAGCTCACCCAAGGCTACTCCGTCATCCACATCGTCGACCTAACCTCCACGCATTGCATGCAGATCCCCACCCTCATCGACGCCATCGCCTCCCGCCACCACGACGTCCCTCCGTTGATCAAGCTCACCGTCGCCGCCCACCGCAACATCCCCCCGATCCTCGACCTCTCCTACGACGAATTGGGCGCCAAATTGGTGAACTTCGCAAGATCCAAAAACGTTATATTGGAATTCAAAGTGATCTCTTCCAGCTACAAGGACGGATTCGCGTCTCTGATCGAACACCTCCGAGTGCAACATATGATATTCGTGGCGGAAGGGCAGCGAAGAGAAGCCCTGGTCATAAACTGCCACATGATGCTCCATTACATCCCCGACGAAACCCTAATCATGAACAGTGATCAGGAATCGTGGTCGTCGTTGAGATCGATGTTCCTGAAGGCGGTGCGGAGTCTAGAGCCGACGATTGTGGTGTTGGTAGAGGAAGACGCGGATTTGACATGGAAGAGTCTGGAGAGCAGAGTGAGGGCGGCGTTTAACTACCTGTGGATACCGTACGACACGGTGGACACGTTCTTGGCACGTGGGAGCGTGCAGAGGGAGTGGTACGAAGCGGATATTGGGTGGAAGATAGAGAATGTGGTAGCGGAGGAAGGGGTGGAGAGGGTGGAGAGAGCCGAGGGGAAGACCAAGTGGGAGGAACGGATGAGGGATGCTAAGTTCGAAGGGATTGGGTGGACTGAGGATGGGGTTTCGGAGGTGAAGGCTATGCTTGATGAACATGCTGCTGGTTGGGGTTTCAAGAAGGATAATCAACATCTTGTGCTCACTTGGAAAGGACATAATGTTGTTTTTGCCTCTCTCTGGATGCCTGCAGCACAGTATATTTCTCCGGTTGACACGTTAGAGCAGAAATTACAGATTGAAAGGAGGCTTGGAAGCGTGAAAGCACGAGAGTATTTTAATCTTCTCACTAGATTTCTTACTTTCAAGATTACCAAACCTAAGTTTAATAAGCTCTGTATAGCAATTATAGGGAGAGACAATCTCCCTCTTCATAATCATCTGATCAGGTCAATCTTAAAAAAGGCATGCCTTTCCAAGTTACCCccaaatagaaaaggaaaagaagaaggttCGTTGAGTGTTAAAATTCCAAATGGGAATCAAAGGAGTGATCTTCAGTCTCTATGCAGAGATTTACCCCAGTCTCCTCGAAAAGTGAGGACTCCAAATTTGCGTGACCGCAGATTCAAGGATCGTCCAAGTCCTCTTGGTCCTCAGGGGAAGAACCATAGTATTGTTTGTGAAGATTCAGCCCCTAGAATCCATGAGCCGCAAAGTACTGTTGATATATATTCTTTAGGTAGCATGCCCCCTCTCTCTGCGGAAGACAGCGATGAGGTTAATCAGGATTCTGGAAGCCCAATCAATTATAGAAGGAGTCCTATTACAGCACCTCTTGGAATCCTCACAAACAGTAAAGGAGCAAGAAAAGTTTCCTTTAATGTATCAGAGCCTCCTTCTGTCTCTAGTACCTGTCAACACATTGGTCTGCTACCTGATACCAATTTCTTGATGAAAAGATTGGAGCAGAAGCTGGCAGTTGAAGGATTTAAAATCTCAGTGGATTCTGCCAACTTATTGAATAATGCACTTGATGTCTACCTCAAAAGAATGATAAAACCCTGTTTGGATTTGGTTGTTTCAAAATCAGATGATAAATGTAGAGGTCCAGGTCCAATCCAACCTGGTTTGAATGGGTTGTCAAATAGTAGATATGTTCAAAAGTCAAGTGAGCCTGTTTCTGCATCTATTTCTGACTTTCGGGCAGCAATGGAGTTGAATCCTGTTATACTTGGTGAAGATTGGCCATTACATTTTGAGAAGAGAGCAATCGGTACGAATCTTGCCATTCCTGGCAGTCTTGACTCCCACTCTACCCAACTTAGTGATGGCAGCCACGAAGTTGTCGTTGAAAACTTTAGAACTCTTGGCAAAAGAATTGACAGTAGGCTTGGACCTGGAATCCGTAAAGAGGACTTGGTCGGAGGTGAAAAGGCCTTTTCCTTGCTGAAGATTCTGGTAATACGCATTGTCGAATTTTCGTGGAGTGGTCGGGTCCATGTTGATTGCTATCCTGGGATCCACGTTTCTCGGGCACATTGA 2469 0.484 MEQLLLHCANAIDTNDFTLAQQILWVLNNIAPPDGNSNQRLASAFLRALAARAAKSGTCKMLAHAPPIHTHTFSIIELANFVDLTPWHRFGFTAANSAILELTQGYSVIHIVDLTSTHCMQIPTLIDAIASRHHDVPPLIKLTVAAHRNIPPILDLSYDELGAKLVNFARSKNVILEFKVISSSYKDGFASLIEHLRVQHMIFVAEGQRREALVINCHMMLHYIPDETLIMNSDQESWSSLRSMFLKAVRSLEPTIVVLVEEDADLTWKSLESRVRAAFNYLWIPYDTVDTFLARGSVQREWYEADIGWKIENVVAEEGVERVERAEGKTKWEERMRDAKFEGIGWTEDGVSEVKAMLDEHAAGWGFKKDNQHLVLTWKGHNVVFASLWMPAAQYISPVDTLEQKLQIERRLGSVKAREYFNLLTRFLTFKITKPKFNKLCIAIIGRDNLPLHNHLIRSILKKACLSKLPPNRKGKEEGSLSVKIPNGNQRSDLQSLCRDLPQSPRKVRTPNLRDRRFKDRPSPLGPQGKNHSIVCEDSAPRIHEPQSTVDIYSLGSMPPLSAEDSDEVNQDSGSPINYRRSPITAPLGILTNSKGARKVSFNVSEPPSVSSTCQHIGLLPDTNFLMKRLEQKLAVEGFKISVDSANLLNNALDVYLKRMIKPCLDLVVSKSDDKCRGPGPIQPGLNGLSNSRYVQKSSEPVSASISDFRAAMELNPVILGEDWPLHFEKRAIGTNLAIPGSLDSHSTQLSDGSHEVVVENFRTLGKRIDSRLGPGIRKEDLVGGEKAFSLLKILVIRIVEFSWSGRVHVDCYPGIHVSRAH 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3608 822 PANTHER SCARECROW-LIKE PROTEIN 32 1 390 - -
Sto6g3608 822 MobiDBLite consensus disorder prediction 509 523 - -
Sto6g3608 822 MobiDBLite consensus disorder prediction 472 532 - -
Sto6g3608 822 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 399 668 IPR024738 GO:0070461
Sto6g3608 822 MobiDBLite consensus disorder prediction 559 581 - -
Sto6g3608 822 ProSiteProfiles GRAS family profile. 1 390 IPR005202 -
Sto6g3608 822 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 390 IPR005202 -
Sto6g3608 822 MobiDBLite consensus disorder prediction 564 580 - -
Sto6g3608 822 MobiDBLite consensus disorder prediction 483 499 - -
Sto6g3608 822 Pfam GRAS domain family 2 389 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3608 Sto-Chr6 41315501 41321981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3608 1 391 GRAS Transcription Factor Family AT3G49950 60.150 2.98e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto6g3608 GRAS 4.1e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3608 - - adu:107487668 565.844