Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3605 ATGGGAGATGAGAGCATGCAGGATAAGGATGCCACGTCTGCCATGACAGCGACATATTCATGCTCCACATCCGCTCGTGCCGTCTCATTTACTCTCACTTCTTTTTTACAATCTTCGCAAATTGACGcgAATGTTTTCGACTCAACTGTGGAGGTGGATCGATTTGCGAGTTTTGGGGAGGTGTGGAGAAAAATTTGGAAGGCTCAAGTTCCTTCAAAGATTAAAATTTTTCTCTGGAGAACTTATAGAAAGGTTTTACCTGTTAGAGCCAATCTTGCAAAAAGGGGTGTTGAAGTTGAAGATGGCTGCCCATTGGGTTGTCCTGATGAGGAGACTGTTCTCCATGCCTTGGTCCACAAGTTGCTTACCGATTTCAAAGGGGCTCTTAACGGGGGGCCTTCGACCGTGGCTCGGGACGCTTCCTCTCCTCGCTGGAAGCCTCCTCCTTTCCCTAAATACAAGGTGAACGTTGATGCAGGGTTGAAGCTAGGGCTTGATGGTGGGGTGGGCTGTGTGATTCGCGACTCGTCGGGCAGGTGTCTCACGGCCCTGGCAGATCGAGTGCCGTTCTCCCGTGACGTCGACATTCTTGAAGCGAAGGCGGTCCTTGTGGGGCTGGAGTTGGCTCGTGATCTCCGAATCAAAGATGTGGTGGTGGAAGGGGATTCGTCGACGGTCCTTCGTGCTCTGAGTGATGGCGCTGTGCTGAGGACGCCGCTTGGTTCGATGCTCTTGGCTATTCGTGAGGTTTGTGTTTGCTTCAGATCCATGGAGTTCAGTTGGGTTCCCAGACTGGTCAACGGAGTTGTTGATAAGTTAGCTTCAATTGGTACTTTAGCTAAAAGTACAAAGTGGATCGATACTCCCGAAGCTCAAGGCCATGCCACTGTTTTCGTAGCCAAGTTCTTTGGCCGCGCTGGCCTCATGTCCTTCATTTCCAACGTCCCTCAAAATCAGAGACCTGCTCTGTTTCAGTCTTTGTTGTTCGAAGCCTGTGGACGAACGGTCAACCCCGTCAACGGAGCCGTGGGCCTTCTTTGGACCGGAAACTGGCACGTGTGTCAGGCCGCCGTCGAGACGGTGCTCCGCGGAGGCACGTTAAGGCCCATTCCGGAGCTTCTAGCTGCGGATGCTCCTACTATGGTCACCGACGAGGCATCTGAGGGGGAAGTAACCTGCACCGATATGTGGAACCCGAGTTCGCGCTTCACCAATTCACGATCTAACAAGTTCTCTACCTCCAAACGCAAGCGATCAGATGAATCCGGCAAGCCTCAGACGGCCGATCTTGATCTTCGATTGACACCGACTTTCCTGCAGAAAGCATCAGGCTACAGCTGCAGACCCGAGATCGGGCGGCCGGGTACGCCGTCGATGAACTCAGAGGAATCCGTGACAACGACGGCGTGCTTGGATAGTGGACTCGGAGATCACTACGCTCAGGGCGGAGAGCGAAAACTTCTCAACCTTTTCATGTGA 1479 0.5267 MGDESMQDKDATSAMTATYSCSTSARAVSFTLTSFLQSSQIDANVFDSTVEVDRFASFGEVWRKIWKAQVPSKIKIFLWRTYRKVLPVRANLAKRGVEVEDGCPLGCPDEETVLHALVHKLLTDFKGALNGGPSTVARDASSPRWKPPPFPKYKVNVDAGLKLGLDGGVGCVIRDSSGRCLTALADRVPFSRDVDILEAKAVLVGLELARDLRIKDVVVEGDSSTVLRALSDGAVLRTPLGSMLLAIREVCVCFRSMEFSWVPRLVNGVVDKLASIGTLAKSTKWIDTPEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPIPELLAADAPTMVTDEASEGEVTCTDMWNPSSRFTNSRSNKFSTSKRKRSDESGKPQTADLDLRLTPTFLQKASGYSCRPEIGRPGTPSMNSEESVTTTACLDSGLGDHYAQGGERKLLNLFM 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3605 492 Pfam Lateral organ boundaries (LOB) domain 289 361 IPR004883 -
Sto6g3605 492 PANTHER LOB DOMAIN-CONTAINING PROTEIN 278 492 - -
Sto6g3605 492 CDD RNase_H_like 155 274 IPR044730 -
Sto6g3605 492 MobiDBLite consensus disorder prediction 413 427 - -
Sto6g3605 492 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 278 492 - -
Sto6g3605 492 SUPERFAMILY Ribonuclease H-like 153 278 IPR012337 -
Sto6g3605 492 Pfam zinc-binding in reverse transcriptase 60 119 IPR026960 -
Sto6g3605 492 MobiDBLite consensus disorder prediction 393 430 - -
Sto6g3605 492 Pfam Reverse transcriptase-like 165 275 IPR002156 GO:0003676|GO:0004523
Sto6g3605 492 MobiDBLite consensus disorder prediction 393 410 - -
Sto6g3605 492 Gene3D - 152 283 IPR036397 GO:0003676
Sto6g3605 492 ProSiteProfiles LOB domain profile. 266 367 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3605 Sto-Chr6 41297954 41303173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3605 279 491 AS2 family AT3G49940 54.812 1.82e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto6g3605 RVT_3 5.5e-22 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1738 11 16185923 16186771 Sto6g3605 6 41297954 41303173 CCT