Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3601 ATGGCCATAAGGCCATTCCAGTTCACCTTCTCGCATGACAGATTGAGATTGATCTCTCTCTTTCGCTCCAAACTCGTGCCATCCTCTCTTCCGTTTCCTTACATTTTCGTCTCCCGTCACTTCGCTGCGTCTGCGGCAACTCCTCTTCACCCACGCGGCCGTCACCTCCGACCGCCGTCACAACCGGACACCCTGGCTCAGAAGATTGGAAAATCGACTCGCCGCCCCGGCGCCTCCTCTAAGGCGAGGGTTTATGCTGACGTCAACGTTGTACGTCCCAAGGAATACTGGGACTATGAGTCTCTGACCGTCCAGTGgggGGAGCAAGATGATTATGAGGTAGTGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTGTTTGAGGGTGTTCACTGCACAGATAATGAAAAATGTGTCATCAAGATTCTCAAaccagtgaagaagaagaagGCCCTTGATTATTGCCACTCACAAGGAATTATGCATCGCGATGTAAAACCACATAATGTAATGATTGACCATGAGCAACGTAAGCTTCGTCTAATAGACTGGGGCCTGGCTGAGTTCTATCATCCAGGAAAAGAATATAACGTCCGGGTTGCGTCAAGatATTTTAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGATTATGATTACTCTTTAGATTTATGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTCCGTAAGGAGCCTTTCTTTTATGGTCATGATAATTATGATCAGCTAGTCAAAATAGCAAAGGTACTTGGGACAGATGAGTTGAATGCATATCTGAACAAATATCGCATAGAGTTGGACCCACATCTTGCTGCACTTGTTGGGAGGCATAGCCGGAAGCCATGGGCTAAGTTCATTAATGTAGAGAATCAACACTTGGCCGTCCCTGAGGCTATTGATTTTGTTGACAAGTTACTGCAATATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCACATCCTTACTTCAATCCAATCAAAAATGCAGAAAGCAGTAGAATTCGTACTCAATGA 1041 0.4486 MAIRPFQFTFSHDRLRLISLFRSKLVPSSLPFPYIFVSRHFAASAATPLHPRGRHLRPPSQPDTLAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWAKFINVENQHLAVPEAIDFVDKLLQYDHQERPTAKEAMAHPYFNPIKNAESSRIRTQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3601 346 Gene3D Transferase(Phosphotransferase) domain 1 129 345 - -
Sto6g3601 346 Pfam Protein kinase domain 150 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3601 346 PANTHER CASEIN KINASE II SUBUNIT ALPHA 150 338 IPR045216 GO:0004674|GO:0006468
Sto6g3601 346 PANTHER CASEIN KINASE II SUBUNIT ALPHA 62 150 IPR045216 GO:0004674|GO:0006468
Sto6g3601 346 SUPERFAMILY Protein kinase-like (PK-like) 104 335 IPR011009 -
Sto6g3601 346 MobiDBLite consensus disorder prediction 49 78 - -
Sto6g3601 346 CDD STKc_CK2_alpha 93 332 IPR045216 GO:0004674|GO:0006468
Sto6g3601 346 ProSiteProfiles Protein kinase domain profile. 21 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3601 346 SMART serkin_6 112 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g3601 346 PANTHER BNAA04G13490D PROTEIN 150 338 - -
Sto6g3601 346 PANTHER BNAA04G13490D PROTEIN 62 150 - -
Sto6g3601 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Sto6g3601 346 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3601 Sto-Chr6 41279805 41285560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3601 110 339 Core Cell Cycle Gene Families AT2G38620 28.897 8.30e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sto6g3601 Pkinase 9.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3601 K03097 - rcu:8283351 400.593