Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3593 atgGCGTCCGATGCAATTGACAAATCTACTAAGGTATGTTTAGGCTCCAGATGGTATGAAAGACTACTAAAACCTAAAGTTATTGGGAAATATATCTCAACTCTTCGTCATCCACCAGGACGCAGCTCCGTTTCTGCAGCAACAAGAGATTTGTGTGAGCGTCTTTTTGATGAAGGTTATAAAGCAGATGTTTACATTAATACTGATAATGGTGGCATTATTTATGCACATTCTAACATTCTTGCCATGGCTTCTCCCGTAATGAGAGGTATGCTTAAGCGAGCAAGAAGTTATCATCATATGAAATCACTCTCAATTTCTGGGGTTCCACATGATGCAGTTCGAGTTTTCATTCGATTCTTGTACAGTTCCTGTTACGAAAAAGAAGAGGCAAAGAAATTCGTGTTGCATTTATTGGTGCTGTCACATGCATACGTTGTCCCCCACTTGAAGCGTGAATGCGAACAGATACTAGAATTGGATTTCCTCACCATCGACAATGTAATTGATGTGTTTCAACTTGCATTGCTCTGTGACGCTCCCCGCCTTAGCCTCATTTGTCACCGTAAGATCCTGAAGAGTTTTAAAGCGGTTTCGGAGTCTGAAGGGTGGAAAATAATGAAACAGAGCCACCCAATTCTAGAGAAGGAACTTCTGGAGTCTCTGATTGAAGAAGAACATAGCACGAAggagaggatgagaaaaattaatGAGAGGAAAATTTATCTTCAATTATACGAGGCAATGGAAGCTCTAGTTCACATATGTAGAGATGGATGTCGAACCATTGGGCCACACGATAAGGACTTCAAAGCAAACCAAGCACCTTGTAAGTTTGTAGCCTGCAAGGGCCTAGAATTGCTGGTCCGTCATTTTGCTGGGTGCAAGTTACGGGTCCCAGGTGGTTGCAATCATTGCAAGAGGATGTGGCAACTATTGGAGTTACACTCTCGAATATGTGCTGATCCTGATACCTGTAGAGTTCCTTTATGCAGGAACTTCAAGGAGAGAATATCAAAACAAAGCAAGAAAGATGAAGTTAGGTGGAAGATACTGGTTGAAAAAATCTTGAGAACAAAGGGCATTGCGGATGTAGCGCTCCTCCTTTGTGTCTCAATAAAAAATCATGAAACCAGGAAGACACTTCTCAACATTTCTTCCTCTTTCACCTTGTCTTGCAGGACAGAACTCTTATATGCTTTCAAAATCGTCTTTTCTGTCTGGAGACTAGATACGATGCTGTCTGTGATGGAGGAGGAATTGGGAAATGACGATTGTGAGGGATCCAAGGTTCTCGATGGTGATAGAGGCGGCGAGGGATGCGTCCTACGTGATTGA 1338 0.417 MASDAIDKSTKVCLGSRWYERLLKPKVIGKYISTLRHPPGRSSVSAATRDLCERLFDEGYKADVYINTDNGGIIYAHSNILAMASPVMRGMLKRARSYHHMKSLSISGVPHDAVRVFIRFLYSSCYEKEEAKKFVLHLLVLSHAYVVPHLKRECEQILELDFLTIDNVIDVFQLALLCDAPRLSLICHRKILKSFKAVSESEGWKIMKQSHPILEKELLESLIEEEHSTKERMRKINERKIYLQLYEAMEALVHICRDGCRTIGPHDKDFKANQAPCKFVACKGLELLVRHFAGCKLRVPGGCNHCKRMWQLLELHSRICADPDTCRVPLCRNFKERISKQSKKDEVRWKILVEKILRTKGIADVALLLCVSIKNHETRKTLLNISSSFTLSCRTELLYAFKIVFSVWRLDTMLSVMEEELGNDDCEGSKVLDGDRGGEGCVLRD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3593 445 CDD BACK 164 205 - -
Sto6g3593 445 Gene3D Potassium Channel Kv1.1; Chain A 42 162 IPR011333 -
Sto6g3593 445 Pfam TAZ zinc finger 246 331 IPR000197 -
Sto6g3593 445 SMART BTB_4 62 162 IPR000210 GO:0005515
Sto6g3593 445 SUPERFAMILY POZ domain 45 158 IPR011333 -
Sto6g3593 445 Coils Coil 219 239 - -
Sto6g3593 445 Gene3D - 163 237 - -
Sto6g3593 445 Gene3D TAZ domain 238 367 IPR035898 -
Sto6g3593 445 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 39 368 IPR044513 -
Sto6g3593 445 SUPERFAMILY TAZ domain 239 340 IPR035898 -
Sto6g3593 445 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 39 368 - -
Sto6g3593 445 SMART TAZ_2 239 332 IPR000197 -
Sto6g3593 445 Pfam BTB/POZ domain 54 159 IPR000210 GO:0005515
Sto6g3593 445 ProSiteProfiles BTB domain profile. 62 130 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3593 Sto-Chr6 41225242 41228664 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Sto6g3593 BTB 1.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3593 - - lja:Lj2g3v1968190.1 528.865