Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3589 ATGGGGAAGAAGCAGCACAGCAAAGATCGCATGTTCATCACTAAAACAGAGTGGGCTACGGAATGGGGAGGAGCCAAATCCAAAGACAATCGTACCCCATTCAAACGTCTTCCTTTTTATTGCTGCGCGCTCACATTTACGCCGTTTGAGTATCCGGTGTGCACGGCTGATGGGAGCGTTTTCGAGGTCATGAATATAACCCCATATGTTATCAAGTATGGAAAGCATCCCGTCACAGGAGCTCCGCTGAAGCAGGAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAtgGGGAATATCAATGCCCTGTTCTTAACAAAGTTTTCACTGAATTCACACATATTGTGGCTGTGAAAACCACAGGAAACGTTTTCTGCTATGAGGCCATTAAAGAATTAAACATCAAGACTAAGAACTGGAAGGAGCTCCTCACTGATGAACCATTCACTAAGGATGACCTCATAACGATTCAGGCAAGTAATCCTAATGCTCTTGACAGCAAGGTTCTTCTGGATTTTGATcatgttaaaaataatttgaaagtTGATGATGAAGAAATAAACAGAATGAGTTCAGACCCATCTTATAACATCAATGTTACTGGAGATATCAAACAAATGCTTCAGGAGATTGGAACTGAGAGAGGAAAGGAAACTGCTATGCATGGGGGAGGTGGTAGCAAGGCACAAAATGAAAGGGCTGCTGCTCTTGCTGCCATATTAGCTGCAAGGTCACGTGTGAAGGAGGATTCTAAGTCAAATGGAGATGCTAAAGTTCCTCAGGGATTTAGTATAGTAGATGCTGCATCTGCTTCAGTTCATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCGTCAAGTGATAAAACTGCTGCTAGGATAGCTATGCACTTGGCTGGTGATAGGGCTCCGGTCAATGGGAAGCTGGTAAAAAGCCGTTACACTACTGGTGCTGCTTCACGATCCTTCACCTCGACATCTTTTGACCCAGTTACAAAGAATGAATATGAATATGTAAAAGTAGAGAagaatccaaagaagaaagGATATGTACAGTTGCATACAACTCATGGTGATTTGAACATTGAGCTGCACTGTGACATAACACCTCGGACATGCGAGAACTTCATCACACTTTGTGAGCGTGGATATTATAATGGTGTTGCATTTCATAGAAATATTCGAAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGGAAAGGAGGTGAATCAATATGGGGAAAACCTTTTAAAGATGAAGTTAACTCCAAATTACTTCATTCAGGAAGGGGCGTTGTTAGCATGGCAAACAGTGGTCCACACACCAATGGCTCCCAGTTTTTCATCCTGTACAAGTCTGCAAATCATTTAAACTTTAAGCACACTGTTTTCGGAGGAGTGGTTGGTGGCTTGACAGCATTGGCAGCCATGGAAAAGGTTCCTGTTGATGACAATGACCGACCTCTGGAGGAAATTAAGATAACAAGTGTGACAGTTTTTGTCAATCCCTATTCAGAACCAGACGAGGAAGAAGAACAGGAGAATGCCAAAGAGAAGAACGCGGAGGATGAAGATAATTGGGCCCCGGACATCCTCCTCCAAACCGCACGTGCCATTGCCGATAAGAACAGCGCGCGTGTCCACCAACTTCTCTGGATGCTCAACGAACTCGCCTCCCCTTACGGCGACACCCATCAGAAACTCGCTTCTTACTTCCTCCAAGCCTTGTTCGCTCGCATCACCGATTCCGGCCTCCGCACCCTCCGCACCTTATCCTCCGCATCCGACAAAACCTGCTCCTTCGAATCCACCCGGAAGACCGTCCTTAAGTTCCAAGAGCTCAGCCCATGGACCACCTTCGGTCACGTCGCTTCCAATGGCGCCATCCTCGAAGCCTTCGAGAACGAACCTAAATTACACATACTCGATTTCAGCAACACCTATTGCACTCAATGGCCCACCCTCCTCGAGGCCCTCGCCACTCGCACCGACGACACTCCTCACCTCCGTCTCACCACCGTCGTCACCAGCCGCGCCGCCGGATCCTCCGTCGCGGCGGTCCAGAAAGTGATGAAAGAAATAGGCAGTCGGATGGAGAAATTCGCGCGGCTGATGGGCGTGCCGTTTAAATTCCACGTGATCCATCACGAGGGCGATCTGTCGGAGTTGAATCTGGCGGAATTGGAGATCAAAGACGACGAGGCGTTGGCGATTAACTGTGTGAATAGTTTGCATTCGGTGAATGTGGTTGGGAATCAGCGAGACGCGTTGATGTCGTGGTTTGGGAGGTTGCAACCTAGGGTTGTTACGGTGGTGGAAGAGGAAGCTGATCTCGATGTTGGATTGGATGGGTTTGAGTTCGTGAAGGGATTTGAGGAGTGTCTgaggtggtttagggtttattttgaGGCGTTGGATGAGAGTTTTCCGAGGACGAGTAACGAGAGGTTGATGCTGGAGCGAGCGGCGGGGAGGGCGATGGTGGACTTGGTGGCTTGTGGTCCGTCGGAGTCGGTGGAGCGGAGGGAGACGGCGGCGCGATGGTCGCAGCGTCTGCATGGGGGAGGGTTCAATCCGCTGTCGTTTAGTGATGAAGTTTGTGACGATGTGAGGGCGCTGCTGAGGAGGTACAGGGAAGGCTGGTCAATGACACAGTGCTCCGACGCCGGAATATTCTTGGCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 2733 0.4801 MGKKQHSKDRMFITKTEWATEWGGAKSKDNRTPFKRLPFYCCALTFTPFEYPVCTADGSVFEVMNITPYVIKYGKHPVTGAPLKQEDLIPLTFHKNSDGEYQCPVLNKVFTEFTHIVAVKTTGNVFCYEAIKELNIKTKNWKELLTDEPFTKDDLITIQASNPNALDSKVLLDFDHVKNNLKVDDEEINRMSSDPSYNINVTGDIKQMLQEIGTERGKETAMHGGGGSKAQNERAAALAAILAARSRVKEDSKSNGDAKVPQGFSIVDAASASVHGRSAAAAKASSSDKTAARIAMHLAGDRAPVNGKLVKSRYTTGAASRSFTSTSFDPVTKNEYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGKGGESIWGKPFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEQENAKEKNAEDEDNWAPDILLQTARAIADKNSARVHQLLWMLNELASPYGDTHQKLASYFLQALFARITDSGLRTLRTLSSASDKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEAFENEPKLHILDFSNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSRAAGSSVAAVQKVMKEIGSRMEKFARLMGVPFKFHVIHHEGDLSELNLAELEIKDDEALAINCVNSLHSVNVVGNQRDALMSWFGRLQPRVVTVVEEEADLDVGLDGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAMVDLVACGPSESVERRETAARWSQRLHGGGFNPLSFSDEVCDDVRALLRRYREGWSMTQCSDAGIFLAWKDQPVVWASAWRP 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3589 910 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 SUPERFAMILY Cyclophilin-like 350 513 IPR029000 -
Sto6g3589 910 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Sto6g3589 910 MobiDBLite consensus disorder prediction 506 525 - -
Sto6g3589 910 Pfam GRAS domain family 533 909 IPR005202 -
Sto6g3589 910 ProSiteProfiles GRAS family profile. 521 909 IPR005202 -
Sto6g3589 910 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Sto6g3589 910 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 Gene3D - 328 515 IPR029000 -
Sto6g3589 910 SUPERFAMILY RING/U-box 37 104 - -
Sto6g3589 910 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Sto6g3589 910 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Sto6g3589 910 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Sto6g3589 910 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 528 IPR044666 -
Sto6g3589 910 CDD cyclophilin_RING 350 507 - -
Sto6g3589 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Sto6g3589 910 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3589 Sto-Chr6 41186971 41195994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3589 1 507 U-box Gene Family AT5G67530 80.671 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto6g3589 GRAS 2.1e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3589 K10598 - gmx:100819923 929.858