Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3586 ATGGGAGCTCCAAAGCAAAAATGGACtgcagaagaagaagcagcacTAAAAGCTGGAGTAATCAAACATGGGGCAGGAAAATGGCGCACTATACTTATGGACCCAGAGTTCAGTGCTATTTTGCGCATGCGCTCAAATGTAGATCTGAAGGATAAATGGAGGAATATAAATGTGACTGCAATTTGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAGGAACCTACCAACCCCCAAAAACGATAACAACCATATGGCTTTGGGTACTGTAGTTCAACATGATGAAGAAGTTCTTGATACTAAGCCTCTAGCAGTTGTTGGTGGAATGTTGCAGTCAGCTAATTCAAAAGAACAAATATCTAGATTGGATAATCTAATATTGGACGCTATTATCAGTTTGAAGGAGCCAAAGGGTTCTGACAGGGCTGCCATTGCTGCTTATATAGAGGAACAACACTGTTCCCCTCCTAACCTGAGAAAGTTATTATCAACTGAACTGAAGCATATGGTGGCAAGTGGCAAATTGATTAAGGTAAAACATAAGTACAGAATTGCACCAAGTTCGACCATCTCTGAGAAAAGAAGATCCTCTAACGTGTTACTCCTGGAAGGGAGACCCAAAGATTCTCCAAAAGCAGAGAGGACCAATGTCAACCCCCTTTCGAAATCCCTGATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACAGCCCAAGAAGCTGCTGCAGCTGCTGCAAAAGCAGTTGCAGAGGCGGAAGCTGCCATTGCTGAGGCTGAGGCAGCTGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCCGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAGTCCAGAacacttcaaagttcaaatttGGTAGCTTCCTAA 903 0.4252 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILMDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKNDNNHMALGTVVQHDEEVLDTKPLAVVGGMLQSANSKEQISRLDNLILDAIISLKEPKGSDRAAIAAYIEEQHCSPPNLRKLLSTELKHMVASGKLIKVKHKYRIAPSSTISEKRRSSNVLLLEGRPKDSPKAERTNVNPLSKSLIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKSRTLQSSNLVAS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3586 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sto6g3586 300 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto6g3586 300 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Sto6g3586 300 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto6g3586 300 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Sto6g3586 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sto6g3586 300 CDD H15 125 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto6g3586 300 CDD SANT_TRF 6 57 - -
Sto6g3586 300 Gene3D - 116 197 IPR036388 -
Sto6g3586 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto6g3586 300 Coils Coil 242 279 - -
Sto6g3586 300 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Sto6g3586 300 PANTHER MYB TRANSCRIPTION FACTOR 1 292 - -
Sto6g3586 300 SMART sant 4 59 IPR001005 -
Sto6g3586 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sto6g3586 300 Gene3D - 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3586 Sto-Chr6 41169914 41173249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3586 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 58.362 7.48e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto6g3586 Linker_histone 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3586 K09422 - gmx:778165 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3586 6 41169914 41173249 Sto11g1755 11 16372064 16378388 CCT