Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3574 ATGCCGATGTATCAGCCTTCTAAGAGAGATGCGCTTCCTGGCTTTGACGGTGGCGGTGACGGCCAGATTCTAGATCTGGATACCGCCGTCAAGGATGGGGTTTTGGGAGGTGTTGACGGTGGGATTGTTGGAGGCGGAGCTGGCGAGAAATTGGATCTGGCCAAGATGATTCAAGAGCTTGACTTGTCCGAAGTTCCTTCAGTCTTTATCTGCCCAATCTCCCTTGAACCAATGCAAGACCCAGTGACACTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATCTCGGCCACTTTACCTGCCCTACAACGATGCAGGAGCTCTGGGACGATTCCGTTACTCCCAATACCACCCTTTATCGTCTAATATACACTTGGTTTTCTCAGAAGTACCTGCTCATGAAGAAGAGATCGGAGGATGTGCAGGGGAGGGCATCTGAACTTCTGGAGACGCTCAAGAAGGTGAAGGGTCAAGCTCGAGTTCAAGCCTTGAAGGAGCTCCATCAAGTGGTGGCTGCTCACGCCACTGCCCGCAAGGCAGTCATTGATGAAGGTGGAGTCTCTGTAATGTCTTCCTTACTTGGTCCTTTTACTTCCCATGCTGTTGGCTCCGAGGTCATTGGTATTCTTGTAAGTTTGACCCTTGATTCCGAATCCAAAAAGAATCTAATGCAACCTGCTAAACTTTCTTTAATGGTGGATATTTTGAATGAGGGTTCAATTGAGACCAAAATCAATTGCACCCGACTGATTGAATCGTTGATTGAGGAGAAGGATTTTCGGTCAGAGATTATCTCAAGCCATAGCCTTTTGGTTGGGGTGATGAGGCTTGTGAAGGATAAGAGACACTCAAATGGAATTCTTCCTGGACTTAGTCTCCTCAGATCATTATGCTTACATAAAGAAGTTAGGAATTTGCTAGTGAGTATTGGGGCTGTTTCTCAGTTGGTTGAACTGTTATCTAGTCTGGATCCTGAATGTTCTGAATTGGCACTTTCCATTTTAGATGCTTTAACATCTATACCCGAAGGCAGAGCAGCTTTGAAGAACTGCTCTAAAACTATACCCAGTATGGTGAGCCATTTAATGAGGATCTCAGAGAACTGCACCCAATATGCATTATCAGTCCTATGGTCTGTTTGCAACCTTGCTCCTGAGGAATGCTCTTCCCTTGCTCTGGATGCAGGACTTGCTGCAAAACTTCTCCTTGTGATTCAAAGTGGGTGCAATCCTATATTGAAACAACAATCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCGGATACCATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1350 0.4563 MPMYQPSKRDALPGFDGGGDGQILDLDTAVKDGVLGGVDGGIVGGGAGEKLDLAKMIQELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVAAHATARKAVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKLSLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGVMRLVKDKRHSNGILPGLSLLRSLCLHKEVRNLLVSIGAVSQLVELLSSLDPECSELALSILDALTSIPEGRAALKNCSKTIPSMVSHLMRISENCTQYALSVLWSVCNLAPEECSSLALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3574 449 SUPERFAMILY ARM repeat 152 434 IPR016024 -
Sto6g3574 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Sto6g3574 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Sto6g3574 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Sto6g3574 449 SUPERFAMILY RING/U-box 60 135 - -
Sto6g3574 449 PANTHER WDSAM1 PROTEIN 37 448 IPR045185 GO:0061630
Sto6g3574 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 37 448 - -
Sto6g3574 449 Gene3D - 138 443 IPR011989 -
Sto6g3574 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Sto6g3574 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3574 Sto-Chr6 41127135 41128484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3574 1 449 U-box Gene Family AT3G49810 75.501 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3574 - - gmx:100779827 750.355