Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3564 ATGAGTGAGCGGAAAATCGTTCTGGTGACTGGGTGTGCCAAAGGTGGCATAGGGTATGAGTACTGCAGGGCATTTGCAGAGCAGAATTGTCACGTTTTCGCGTCTGACATCACACACAGGATGGCAGACATGTTGGATTTGAAGTCAGACAAGAACAACATAGATACAATGGAGCTTGATGTGTGTTGTGATGAGAGTGTGAGTAAGGGTGTGGAGAGTGTGATATCCAAATGTGGGCGCATAGATATTCTCATCAATAACGCAGGGATAGGCAGTACTGGCCCTCTAGCTGAGCTCCCACTAGATGCTATTAGGAAGGCTTGGGAGATTAACACTCTTGGCCAAATCAGATTGGTGCAACACGTGGTGCCTCATATGGCTTCACGTGGAAGTGGTAGTATTGTGAATGTGGGGAGTGTCGTGGGTACAGTGTCCACACCATGGGCTGGCTCGTATTGTGCTAGTAAGGCTGCTGTGATTGCCATGTCCAATAGCCTGCGTCTTGAACTGAGGCCGTTTGGGATTAATGTGGTTCAAGTTCTTCCTGGGGCTGTCAGGTCTAATCTGGGGAGTGCTAATATGGAGAGACTAGGGGGTTATGAGTGGAAGCTTTATAAGGGTTTTAAAGAGGTGATTGAGGAACGAGCTAGAGCTTCTCAGGGTGCAAAAGCCACAGATGGTGCTGTTTTTGCTAGACATGTTGCCAAGAAGGTTTTGAGCCCAAGACCACCTAGGCAAATTGTGTTTGGTCATATGACTGCTTTGTTTGCCTTTCTCTCTTGCTCTCCTATGTGGGTGAGGGATCTGTTTTTCTCCAACCGTTTTGGCCTAAACACAAGGCACTGGGAGGGACACATAGAGTTGCTCCTCAAGTGGGGTCACAAGAAATACCACTCTACTTTGCCTCATCAACTGTTGGGAAAGGAACtcaatttgttcaaacttgATGTCTTTCTCGttctttttggattttggaataTTAGACACACAACCATGGagaatgatgatggtggtgggaGTGAGAATAACTGGTTGGGATTCTCTCTGTCTCCTCATATGAATCTAGATGTTCCTTCAGACTCTCATCAACATGAGACAACACAACCTCCCTCCGCTGCTGGAGAAGCAGTTCCAGCAAGCTTTTATCACTCTATACCTCCTCTTCCTAGCTATGGCCATGGCTTCTACTACTATGGACTTGAAGCTGAAAGTGTTGGCCTCTACTCACCCCTCCCTGTCATGCCCCTCAAATCTGATGGCTCTCTCTATGTAATGGAACCTCTAAGCAGGTCACACTCACAACAACAACCCCAAGCAATGGTAACAAGTTCAACACCAAAACTAGAGAATTTCTTAGGGAGCTCATCAATGGGAACACCTCATTATGAATGCAATGCAAGAGAAGCCATGCCTCTGAGTTTGAACAGTATGATTTACTGCAACCAATCCTCCCGCATGGAACAAGGGCAAGAAATTGAGGCCCAGGCTTTTTCAGCATACTACTCTGGCTTTAGAAGTAATGATATGATGTTGGAAGGGCCAAACCAGAATGAGATTTCAGAATGCAATGTGCAGCAGGTGCCAAATATGGGGGAGGATGGAGGTGGCGGTGTGAAGAGGTGGGTGATGAGAAGCTCTAGCAACCCAAGTAACAACAATGGACACGACTCAAAGATGATTATTGGTGTGGAGGATAATAATGGAGGTGAATCTGGGTCCATTGGGTCAATGGCATATGGGGATTTGCAGTCACTGAGCTTGTCCATGAGTCCTGGCTCACAATCAAGCTGTGTCACAAGTTCACAGCGTGCATCACCTTCTGTTATTGATTCTGTTGCGTTGGAGACAAAGAAAAGAGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCACAGGAAATCCATAGATACCTTTGGCCAAAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCTCATCTTTGGGACAACAGCTGTAAGAAAGAAGGTCAAAGCAGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATCAATTTCcctTTGGAAAATTATCAAAATCAACTGGAGGATATGAAGAACATGACCAGACAGGAATACGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCTAGAGGTGCTTCCATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGATGGCAAGCTCGAATCGGCAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCAGCTATAAAATTCCGAGGAGTAAATGCTGTGACCAACTTTGACATTACAAGATACGATGTGGAGAAAATCATGGGTAGCAGTAACCTCCTTAGTGGTGAACTAGCCAGGCGGAACAGAGAGATTATTACTGATGCTGGAAATAATGATCATCAGGCTATCACTACTAAAACTACAACATTTGATGAAACTCAGGAAGCCATTTTAATGCAAAAGATGAGCTGTGAAAGCCAATCAAATCCTTCTCAATGGATTACAGAACTTGACCAGAACCCACCAAGAATTGATGCTTACAGTTACAAAAGTACTCAATCCTTCTCAGTGCCTTTGGATAACATGATTCATCAAGTGGAGGACTCaaacaagaataataataatatgtcaAATCCTTCTTCTTTGGTCACAAGCTTGAGCAGCTCACGTGAAGTTAGCCCTGATAAGCCAAGCTTGCCTGTTCTCTCTGAAATGCCTTCGTTAGTCACAAGCTTGAGGCCTCCACTTTCGTTGCCTCATGTCCCAGTTTTTGCTGGTTGGACAgatgcttaa 2904 0.4394 MSERKIVLVTGCAKGGIGYEYCRAFAEQNCHVFASDITHRMADMLDLKSDKNNIDTMELDVCCDESVSKGVESVISKCGRIDILINNAGIGSTGPLAELPLDAIRKAWEINTLGQIRLVQHVVPHMASRGSGSIVNVGSVVGTVSTPWAGSYCASKAAVIAMSNSLRLELRPFGINVVQVLPGAVRSNLGSANMERLGGYEWKLYKGFKEVIEERARASQGAKATDGAVFARHVAKKVLSPRPPRQIVFGHMTALFAFLSCSPMWVRDLFFSNRFGLNTRHWEGHIELLLKWGHKKYHSTLPHQLLGKELNLFKLDVFLVLFGFWNIRHTTMENDDGGGSENNWLGFSLSPHMNLDVPSDSHQHETTQPPSAAGEAVPASFYHSIPPLPSYGHGFYYYGLEAESVGLYSPLPVMPLKSDGSLYVMEPLSRSHSQQQPQAMVTSSTPKLENFLGSSSMGTPHYECNAREAMPLSLNSMIYCNQSSRMEQGQEIEAQAFSAYYSGFRSNDMMLEGPNQNEISECNVQQVPNMGEDGGGGVKRWVMRSSSNPSNNNGHDSKMIIGVEDNNGGESGSIGSMAYGDLQSLSLSMSPGSQSSCVTSSQRASPSVIDSVALETKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNQLEDMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMGSSNLLSGELARRNREIITDAGNNDHQAITTKTTTFDETQEAILMQKMSCESQSNPSQWITELDQNPPRIDAYSYKSTQSFSVPLDNMIHQVEDSNKNNNNMSNPSSLVTSLSSSREVSPDKPSLPVLSEMPSLVTSLRPPLSLPHVPVFAGWTDA 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3564 967 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 IPR002347 -
Sto6g3564 967 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 IPR002347 -
Sto6g3564 967 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 IPR002347 -
Sto6g3564 967 CDD AP2 643 707 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 Pfam AP2 domain 644 699 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 Pfam AP2 domain 744 793 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 PRINTS Ethylene responsive element binding protein signature 645 656 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 PRINTS Ethylene responsive element binding protein signature 783 803 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 SUPERFAMILY DNA-binding domain 643 709 IPR016177 GO:0003677
Sto6g3564 967 Gene3D - 2 259 - -
Sto6g3564 967 ProSiteProfiles AP2/ERF domain profile. 743 801 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 SUPERFAMILY DNA-binding domain 742 802 IPR016177 GO:0003677
Sto6g3564 967 SMART rav1_2 644 713 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 SMART rav1_2 743 807 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 CDD 17beta-HSD-like_SDR_c 5 252 - -
Sto6g3564 967 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Sto6g3564 967 PRINTS Glucose/ribitol dehydrogenase family signature 79 90 IPR002347 -
Sto6g3564 967 PRINTS Glucose/ribitol dehydrogenase family signature 126 142 IPR002347 -
Sto6g3564 967 PRINTS Glucose/ribitol dehydrogenase family signature 152 171 IPR002347 -
Sto6g3564 967 PRINTS Glucose/ribitol dehydrogenase family signature 173 190 IPR002347 -
Sto6g3564 967 CDD AP2 742 803 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 Gene3D AP2/ERF domain 743 803 IPR036955 GO:0003700|GO:0006355
Sto6g3564 967 Gene3D AP2/ERF domain 643 709 IPR036955 GO:0003700|GO:0006355
Sto6g3564 967 Pfam short chain dehydrogenase 5 191 IPR002347 -
Sto6g3564 967 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 340 965 - -
Sto6g3564 967 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 340 965 - -
Sto6g3564 967 MobiDBLite consensus disorder prediction 356 370 - -
Sto6g3564 967 MobiDBLite consensus disorder prediction 356 375 - -
Sto6g3564 967 MobiDBLite consensus disorder prediction 904 931 - -
Sto6g3564 967 MobiDBLite consensus disorder prediction 904 936 - -
Sto6g3564 967 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 139 167 IPR020904 GO:0016491
Sto6g3564 967 ProSiteProfiles AP2/ERF domain profile. 644 707 IPR001471 GO:0003700|GO:0006355
Sto6g3564 967 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 256 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3564 Sto-Chr6 41065225 41071906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3564 406 840 AP2-EREBP Transcription Factor Family AT4G37750 56.223 1.41e-150 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sto6g3564 adh_short 9.8e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3564 K09285 - gmx:100787611 787.719