Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3561 ATGGCCGAAACAAGTGAAAATTCGACAAAGGAAACTGTGCGCCAATATGAAGATGTGGAGGACCAAACTTTCGAAGAGCTTGGATTAGATGCTCGTCTAATCCGTGCCTTACTCAAAAAAGGAATTAAGGAACCCACTCCAATTCAGAGGGTTGCAGTTCCACTCGTATTGGAAGGTAAGGATGTGGTTGCTCGAGCCAAAACGGGTTCTGGCAAGACATTTGCATACCTTCTTCCGTTGCTTCAAAAATTGTTTACTAATAATGTTCAAAGAAAGAAGCTAGCACCCAATGCATTCATTCTTGTGCCGACTCGAGAACTGTGTCAACAGGTATATGCAGAGATATCATCTCTCATAGAATTATGCAGAGTTCAAGTGAAAGCTGTGCAATTGACTAGCAATATGCGAGCTAATGATCTGCGGGCAGCACTGGCTGGGCCCCCTGATGTTTTGATTTCCACACCTGCTTGCGTAGCAAAGTGCTTGTCCACTAGCATACTTCAAGCGACATCCATCAATGGTTCACTTGAAACTCTGGTTCTTGATGAGGCTGATCTTCTATTATCATACGGctatgaaaatgatataaaagcTTTTACAACTCACATACCCAGAAGTTGCCAGTGTCTGCTTATGTCCGCGACATCAAGTGCTGATGTGGACAAACTAAAGAAGTTGATTTTACACAACCCCTTTATTTTGACTTTACCTGAAGTAGGAAATCAGAAGGATGAGGTCATCCCTAAAAATGTTCAACAGTTTTGGATCTCATGCCCTGCCAGCGATAAGTTGCTTTACATCCTTGCCCTGTTGAAGTTGGAGTTGgtccaaaagaaaattttgatattcaccAATAACATAGACATGAGTTTCAGATTAAAACTATTCCTGGAAAAGTTTGGGATCAAGTCCGCTGTTTTAAATGCTGAGTTGCCACAAAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTAATTGCAACTGATGACAGCCACACAAAGGATAAGGAAGAAGCAACTAAGGAAAGTAATGGTGAATTGCGGAAGTCCAGAAAACGTATTAAGCAAAAGTTAGATTCTGAATTTGGAGTAGTGAGGGGAGTTGACTTCAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTTCATCGAATAGGACGTACTGGAAGAGCATACAATTCTGGGTCTTCTGTCTCTCTGGTTTCTACAGATGAGATGGAAACTTTAGATGAAATAAAATCTTTTGTTGGGGATGATGAAAACAATGGCTCAAACTCCATTGCAGAATTTCCATTGCTCACCATGAATGCAGTGGAATCTTTACGGTACAGGGCCGAGGATGTTGCGAAGAGTGTAACAAAAATTGCTGTCCGTGAATCACGAGCTCAGGATTTGAGGAATGAAATTCTGAATTCTGAAAAGTTGAAGTCCCATTTTGAGTCTAATCCAAGGGATCTAGATCTGTTGAAGCATGATAAAGTTTTGAGCAAAAAAGCACCTCCTCCGCATCTACGAGATGTTCCTGACTACCTAGTGGACAAAACAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAGTCGTTCTCGGGTACCCAAGAGGAAATTCAAAAAAGGTGGAGACCCTCTCAAGGCTTTATCTGCTAAGCCTTCGAAAAGATCACGCAACGGTGATGGACATAAacggaagaggaagaaggaagtTTGA 1767 0.4007 MAETSENSTKETVRQYEDVEDQTFEELGLDARLIRALLKKGIKEPTPIQRVAVPLVLEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLAPNAFILVPTRELCQQVYAEISSLIELCRVQVKAVQLTSNMRANDLRAALAGPPDVLISTPACVAKCLSTSILQATSINGSLETLVLDEADLLLSYGYENDIKAFTTHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDEVIPKNVQQFWISCPASDKLLYILALLKLELVQKKILIFTNNIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHTKDKEEATKESNGELRKSRKRIKQKLDSEFGVVRGVDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGSSVSLVSTDEMETLDEIKSFVGDDENNGSNSIAEFPLLTMNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKSHFESNPRDLDLLKHDKVLSKKAPPPHLRDVPDYLVDKTTKEAREMVKLARDAMGNNSRSRVPKRKFKKGGDPLKALSAKPSKRSRNGDGHKRKRKKEV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3561 588 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Sto6g3561 588 PANTHER RNA HELICASE 12 540 - -
Sto6g3561 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 235 IPR027417 -
Sto6g3561 588 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Sto6g3561 588 MobiDBLite consensus disorder prediction 339 358 - -
Sto6g3561 588 CDD DEADc_DDX56 29 236 - -
Sto6g3561 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Sto6g3561 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Sto6g3561 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Sto6g3561 588 SMART ultradead3 41 254 IPR014001 -
Sto6g3561 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Sto6g3561 588 SMART helicmild6 291 405 IPR001650 -
Sto6g3561 588 Gene3D - 238 443 IPR027417 -
Sto6g3561 588 MobiDBLite consensus disorder prediction 540 588 - -
Sto6g3561 588 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 12 540 - -
Sto6g3561 588 CDD SF2_C_DEAD 251 414 - -
Sto6g3561 588 Gene3D - 1 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3561 Sto-Chr6 41040041 41044993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3561 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.296 1.05e-35 137