Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3558 ATGGGGAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAGAGGGCCATGGTCACCTGAGGAAGACGCCAAACTCAAGTCTTATATTGAACACCACGGCACCGGCGGCAACTGGATTGCTTTGCCCAACaaaatagggctTAAGAGATGTGGAAAAAGCTGTCGGCTTCGATGGTTGAATTATCTTCGGCCAAACATAAAGCATGGGGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAATAATAGCAGCCCAATTACCAGGACGAACAGATAATGATATAAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCGGTGGGAAGCAGCCGCCCAACCAAGTTTCTCATCCAAACATCCTCTCTTCTATGCAAActcatcatcatttaataactgatcccacttccacttccatctCTCACCTCAATCTCAACGCTTGTACTACTCAATTACCAATATCCCCCACCAATATTAACCATCATCATGACGATATGATTTCCTTCCAACTCCCACAACCGCATCACTCCCTATTTATTAATAGTACCAATCTTCCCAGTTCTAGTGCTACTACTGAAAACAACACCAATACCAACACTAGTTCTCATGACTCACCAACCATCTTCCAAGCTGCCTTTCAAAGCTTCCCAATTAATCATCATGATTTCACCCACTTTGTGGATGTCAAGACTGAGCAACAAGTTTTAGAGGATGCAATGTTGGATTTGGCTATGGATATGGATTTGGGTATAATAATGTCTTCAACACAAACCATCACAACCTCCCCATCATCACATATCACTTCTCAATCTCATCATCCTTTCATTTCCCAAACCCAAACAATAATGCCTCAATTCCACTGTGCTTTCCATGACGCTACCTACTTTGGGATGCAATaa 930 0.4108 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEHHGTGGNWIALPNKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLGGKQPPNQVSHPNILSSMQTHHHLITDPTSTSISHLNLNACTTQLPISPTNINHHHDDMISFQLPQPHHSLFINSTNLPSSSATTENNTNTNTSSHDSPTIFQAAFQSFPINHHDFTHFVDVKTEQQVLEDAMLDLAMDMDLGIIMSSTQTITTSPSSHITSQSHHPFISQTQTIMPQFHCAFHDATYFGMQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3558 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto6g3558 309 CDD SANT 71 111 IPR001005 -
Sto6g3558 309 CDD SANT 16 62 IPR001005 -
Sto6g3558 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Sto6g3558 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sto6g3558 309 Gene3D - 70 140 - -
Sto6g3558 309 PANTHER OS09G0431300 PROTEIN 1 251 - -
Sto6g3558 309 PANTHER OS09G0431300 PROTEIN 1 251 - -
Sto6g3558 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sto6g3558 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto6g3558 309 MobiDBLite consensus disorder prediction 193 215 - -
Sto6g3558 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto6g3558 309 Gene3D - 7 68 - -
Sto6g3558 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sto6g3558 309 SMART sant 13 64 IPR001005 -
Sto6g3558 309 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3558 Sto-Chr6 41008457 41009573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3558 1 121 MYB Transcription Factor Family AT3G49690 91.736 1.82e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g3558 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3558 K09422 - gmx:100800290 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3558 6 41008457 41009573 Sto11g1784 11 16583234 16600023 CCT