Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3554 ATGGGTATTGGGGATGGTAGAAACTCAGGCCTTCACCTTGTTCTAGGGTTAGGATTGAGTGGTCCATCCAAGGGTGATCATACAAGTATGGGAAGCAAGAGGTGCTCCAATTTGACGGGAACCAGTAGCAGTTGTGATAATGATGAGCCAAGTCTAACGTTGGGTCTTTGGGGCGAGAGTTGTAATAAAAAGATAGATGGGAATAAGGTTTGTGGGGAGTTTTGGCGGCAAAGTTCACCTCAGGCTCACAGTGGTGTTTCATCCTTCTCGAGCGGGAGGGTGAAGAGGGAGAGAGATGTTAGCAGCGAAGAGGCAGACACAGAGAGGGTATCCTCAAGAGTGAGCGATGAAGATGAGGATGGGTCCAATGCCAGAAAGAAACTCAGACTCACAAAGCAACAATCTGCTTTGCTGGAGGAAAGCTTCAAACAACATAGCACTCTCAATCCTAAGCAAAAGCAAGCATTAGCGAGGCAGTTGAATTTACGGGCACGACAAGTAGAGGTGTGGTTCCAAAATCGGAGAGCCAGGGAAGTTGAATATTCAACAGGAATCAGGTTGAATGATAAATTAAAGGAGTGTTTCACGGAACTTGGAATATTAATAAGACAGCCCATATGGGGTGTATTCCGTTGTGGTGGTGATGGGACCGCCATTTCTTTGAAAGGTAAGAACGTTCCATCCAAGTTCTTGAATGATGCAGATGAAGAAAATGATTCTGTAAACCCAGATTTCTTAAAATGGGAGTCCTGGCTCATGGATTCTAATAAACTGCTAGAAAATGTGCCAACTACTTTTACTTCAAAAATGGGAACTACTGTTTTGTAG 828 0.4432 MGIGDGRNSGLHLVLGLGLSGPSKGDHTSMGSKRCSNLTGTSSSCDNDEPSLTLGLWGESCNKKIDGNKVCGEFWRQSSPQAHSGVSSFSSGRVKRERDVSSEEADTERVSSRVSDEDEDGSNARKKLRLTKQQSALLEESFKQHSTLNPKQKQALARQLNLRARQVEVWFQNRRAREVEYSTGIRLNDKLKECFTELGILIRQPIWGVFRCGGDGTAISLKGKNVPSKFLNDADEENDSVNPDFLKWESWLMDSNKLLENVPTTFTSKMGTTVL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3554 275 PANTHER - 4 194 - -
Sto6g3554 275 MobiDBLite consensus disorder prediction 25 49 - -
Sto6g3554 275 MobiDBLite consensus disorder prediction 80 127 - -
Sto6g3554 275 CDD homeodomain 125 178 IPR001356 GO:0003677
Sto6g3554 275 SUPERFAMILY Homeodomain-like 112 178 IPR009057 -
Sto6g3554 275 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Sto6g3554 275 MobiDBLite consensus disorder prediction 92 127 - -
Sto6g3554 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 4 194 - -
Sto6g3554 275 SMART HOX_1 123 185 IPR001356 GO:0003677
Sto6g3554 275 MobiDBLite consensus disorder prediction 20 49 - -
Sto6g3554 275 Pfam Homeodomain 125 178 IPR001356 GO:0003677
Sto6g3554 275 Gene3D - 118 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3554 Sto-Chr6 40964544 40969116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3554 1 177 Homeobox Transcription Factor Family AT4G37790 56.186 4.38e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto6g3554 Homeodomain 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3554 K09338 - tcc:18611354 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3554 6 40964544 40969116 Sto11g1789 11 16645165 16646243 CCT