Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3542 ATGCTTCTCTACGTCTCACTTTGCAGTGTAACCCGAGATTTGGAagcaaaattaaagaaaatccaTATCAAGATGATGGAAATTTCATCCAACAACTACGAGCTTCCAGCTGAGCTAGTAGGAATGGAGGATTCGTGTTTGTTTGAGGAGTACCCGATAGATTCATTTGGATATGGGGTTGATCAGTTGCAGTCTTTCTCAGGATCCGGGGATAGCTGCTATTCCTCTTACAACGACTACGCTTTTAACTCCAAAAGCTTCCCGGTGGAAAGTCCTGAATCAGTTGCTCCTCCACCCCCACCCTCCAGACCTGCCAAGCAACTCAAGACCACTCATCATAATCATACTTGGACTCAACCCACTACTACTACTCTCCCACCTCATAAgcctaattcttcttcttccgccTCCCACATCATTTCTTTTGACAACTCCAACTCCAACTCCAACTCTTCCTCTCTCCCTAACTCCCACCACTTTTACAGCTTGGACTCTACTCCTACTCTCAAGCCTAAAACCGAGAATCTCTCCCCTGACAACTTGGATTTCTCTGCTTTCCTTTCTCAACCTCCCTATCCCTATCCCTATGACGACCACAAACTTGTGCATAAAGCACCCATCCCCAACAAACCTCCCTCCACAATCCCCAGAAACCCAATCCAAGCTCAAGATCACGTCATGGCCGAAAGGAAACGAAGGGAAAAACTCAGCCAGAGGTTCATTGCTCTTTCTGCCATTCTTCCTGGCCTCAAAAAGATGGACAAGGCTTCCGTCCTAGGAGATGCTATCAAGTATGTCAAACAACTGCAGGACCGGGTCAAGAGTCTCGAAGAACAAGTAGCCCACAAATCGGTCGAATCAGCAGTGTTTGTCAACAGGTCCATTGTCTTCGCCGAGGATGACGCCTCCTCCTCCGATGAGAATTGTGAGAGCCGCTCCCTGGGACTGGAGCAGCCTCTCCCCGAAATTGAAGCAAGAGTGTCCGGGAAAGAGGTGCTCATCAGAATCCACTGCGAGAAGCACAATGGTTAtggatcttcttcttctttgaatGCTGCGAGCAAAATAGCTCTAGTCATCTTGAATCATGTTATTTCTGCAAAACTTGATGATCGCAACGATCTGATCTGGCATCATCAAGTCAGTGCTTAG 1152 0.4514 MLLYVSLCSVTRDLEAKLKKIHIKMMEISSNNYELPAELVGMEDSCLFEEYPIDSFGYGVDQLQSFSGSGDSCYSSYNDYAFNSKSFPVESPESVAPPPPPSRPAKQLKTTHHNHTWTQPTTTTLPPHKPNSSSSASHIISFDNSNSNSNSSSLPNSHHFYSLDSTPTLKPKTENLSPDNLDFSAFLSQPPYPYPYDDHKLVHKAPIPNKPPSTIPRNPIQAQDHVMAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQDRVKSLEEQVAHKSVESAVFVNRSIVFAEDDASSSDENCESRSLGLEQPLPEIEARVSGKEVLIRIHCEKHNGYGSSSSLNAASKIALVILNHVISAKLDDRNDLIWHHQVSA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3542 383 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 26 363 - -
Sto6g3542 383 SMART finulus 226 275 IPR011598 GO:0046983
Sto6g3542 383 Coils Coil 259 286 - -
Sto6g3542 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Sto6g3542 383 CDD bHLH_AtNAI1_like 222 294 - -
Sto6g3542 383 MobiDBLite consensus disorder prediction 111 154 - -
Sto6g3542 383 MobiDBLite consensus disorder prediction 88 154 - -
Sto6g3542 383 Pfam Helix-loop-helix DNA-binding domain 223 270 IPR011598 GO:0046983
Sto6g3542 383 PANTHER BHLH TRANSCRIPTION FACTOR 26 363 - -
Sto6g3542 383 Gene3D - 216 284 IPR036638 GO:0046983
Sto6g3542 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3542 Sto-Chr6 40904933 40909941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3542 103 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.803 1.17e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g3542 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3542 - - adu:107482661 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3542 6 40904933 40909941 Sto11g1803 11 16759171 16774265 CCT