Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3535 ATGTACATTGTAGAAGTCTCCTATCAAAGCTTTCAGTCTTTGGTTGGAAGTGGTTTACATATATCAGCATATCACCAAGTTAGGTTTCTCATTCTGCAAGCTGGTTTTAGAAATAGTACCATGGCTCCTCCAGAGATTGGGCTTCTCTCTATGACTCACCTGTCGCAACGCCAAGTTCAACACCATCctccaaaccctaatacctCTGCCTCTTCCTGGATGTGGAACCCTAAGGAACACCCAGAAGAGGACGAGTCATGGGAGGTCAGAGCTTTTGCAGAAGACACCAGAAACATCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACCTTTTGCCGAAGAGAGTTCCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCCACCAGCTCCACCCTCCCAGCTCTACGGCCTCCTTCCTAATCCCAGGCCCAGGCCCAGGCCCGGCCCAAGACCTTCTTCCCAATGCCGCCGGATTATGCCTTCTCTACCATTTGCCAACTACTACCACCACTACGAATCATCCCACTGCTCTCATGACTAGTGCATGTGTGGAAGTGGAATCGCCATCCACCCTCCTCTCTATTTCTCCCTGTCCACCCAATAATTTTGACTTTCCAGCGCTACATGTACGGTCAGCCTCACCCTCAGGCTCAGGCTCGAGCACCCATGTTTCGTCTTTCTCTCATCACTCTAACAAACTCCAACTTCCTTCCGATAATGCCCACCAACACCTTGATCTTGAGCTCCGACTGGGCCAAGGCCCAACACCTacctga 810 0.516 MYIVEVSYQSFQSLVGSGLHISAYHQVRFLILQAGFRNSTMAPPEIGLLSMTHLSQRQVQHHPPNPNTSASSWMWNPKEHPEEDESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPPSSTASFLIPGPGPGPAQDLLPNAAGLCLLYHLPTTTTTTNHPTALMTSACVEVESPSTLLSISPCPPNNFDFPALHVRSASPSGSGSSTHVSSFSHHSNKLQLPSDNAHQHLDLELRLGQGPTPT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3535 269 MobiDBLite consensus disorder prediction 58 79 - -
Sto6g3535 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Sto6g3535 269 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Sto6g3535 269 MobiDBLite consensus disorder prediction 224 248 - -
Sto6g3535 269 PANTHER OS07G0101800 PROTEIN 74 263 - -
Sto6g3535 269 MobiDBLite consensus disorder prediction 58 75 - -
Sto6g3535 269 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 74 263 - -
Sto6g3535 269 SUPERFAMILY beta-beta-alpha zinc fingers 106 136 IPR036236 -
Sto6g3535 269 SMART c2h2final6 109 131 IPR013087 -
Sto6g3535 269 Pfam C2H2-type zinc finger 109 133 - -
Sto6g3535 269 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3535 Sto-Chr6 40850090 40856188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3535 69 266 C2H2 Transcription Factor Family AT4G17810 40.099 9.19e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto6g3535 zf-C2H2_6 5.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3535 - - lja:Lj2g3v1984740.1 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3535 6 40850090 40856188 Sto6g3535 6 40850090 40856188 ECH