Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3531 ATGGTTAGAAGGTGTAATGAATTTCGGCTCCGGATTTCCTTCTCAGTTATTTTAATTCCAGTGCCTACTCATTGTCTTTCACTCAAACAGTCTCactctctcctctctctctttctctgggAAAGTAGGTTTGAAGAAGATAACTCAAGTGAATCCCAAGAAGCTGCATTTGCGGCCATTTCGCGCAATTCAAGCACCAGTTTCCGGAAGCCTCCAAATTCACTTATTTCATACTATCCTATCTCCCTTGATCTGCTGCAAATGGATTCTCGGGAGCCGCCTCAGCCCCCGCCACCGCCACATTTACAATCGCAACCGCCGTCAGCGCCGCCAAACATGATGATGGGGCCTGTTTCCTATTCCTCCACTATGCACAACCCCAACACTTGTTCCATGATCGGCCACAATTCTACGCCCATGATGATGGGCCCTGCCACAGCTCGATTTCCGTTCATCCAACAACCCCCACCTCCTCAATCTAAGCCTTCCGAACTTCTTAGCAACACTAGTCCTTTCGACGGCTCCTCCTCCTCCGCATTGAGGCCGTGTGGGTTCAATATGGATTCtacaaagaagaagagaggccGGCCTAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGGCTCCCACGCCTATGTCTTCTTCTTCCGCTCCTGCTGATTTGAGTGGTACGACGTCCGGGGAGCCTTCCGCTAAAAAGAATAGGGGGAGGCCGCCGGGCTCTGGCAAGAAGCAGCTGGATGCTCTtgGAGCTGGCGGGCTAGGCTTTACTCCACACGTAATCATGGTGAAAACTGGCGAGGATATTGCATCGAAGATTATGGCCTTCTCTGAACAAGGGCCACGTGCAATTTGTATTCTTTCTGCTAATGGTGCAATTTGCAATGCCACCCTTAGACAGCCAGCAATGTCTGGTGGCACCATGCATTATGAGGGCCGATATGAGATTATATCTCTATCAGGTTCTTTTCTGGTATCTGATACTGGTGGCTGTAACTTAATGGGTGGTTTGAGTACATCTCTTGCAGCAGCTGATGGAAAAGTTGTGGGTGGTGGAGTTGCTGGAACGCTAATTGCAGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATCACGGAAGGAAAAAAATCGAgctcagacatgctgaaatcaGGGCCTTCCTCAGTACCAGCATCCCAAATGTTGAATTTTGGTGCTTCTGTGACTCCAACCAGTCCTACCTCTCAAGGGGCTTCAAGCGACTCCTCTGATGACAATGACGATAGTCCTTTTCATAGGGGTCCTGGGCCTGGGTCTGGGCCCGGTCCTGGAGTCTACAATAATGTTAGTCAGCCCATTCATAATATGCAGTGGAATCATCATCCACTATGGACTGGCCAAGCACAGCAGTGA 1401 0.4725 MVRRCNEFRLRISFSVILIPVPTHCLSLKQSHSLLSLFLWESRFEEDNSSESQEAAFAAISRNSSTSFRKPPNSLISYYPISLDLLQMDSREPPQPPPPPHLQSQPPSAPPNMMMGPVSYSSTMHNPNTCSMIGHNSTPMMMGPATARFPFIQQPPPPQSKPSELLSNTSPFDGSSSSALRPCGFNMDSTKKKRGRPRKYSPDGNIALGLAPTPMSSSSAPADLSGTTSGEPSAKKNRGRPPGSGKKQLDALGAGGLGFTPHVIMVKTGEDIASKIMAFSEQGPRAICILSANGAICNATLRQPAMSGGTMHYEGRYEIISLSGSFLVSDTGGCNLMGGLSTSLAAADGKVVGGGVAGTLIAASPVQVIVGSFITEGKKSSSDMLKSGPSSVPASQMLNFGASVTPTSPTSQGASSDSSDDNDDSPFHRGPGPGSGPGPGVYNNVSQPIHNMQWNHHPLWTGQAQQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3531 466 ProSiteProfiles PPC domain profile profile. 255 394 IPR005175 -
Sto6g3531 466 CDD DUF296 260 373 IPR005175 -
Sto6g3531 466 SUPERFAMILY AF0104/ALDC/Ptd012-like 259 375 - -
Sto6g3531 466 Pfam Plants and Prokaryotes Conserved (PCC) domain 261 373 IPR005175 -
Sto6g3531 466 MobiDBLite consensus disorder prediction 379 420 - -
Sto6g3531 466 Gene3D - 261 386 - -
Sto6g3531 466 MobiDBLite consensus disorder prediction 88 122 - -
Sto6g3531 466 MobiDBLite consensus disorder prediction 163 184 - -
Sto6g3531 466 MobiDBLite consensus disorder prediction 379 466 - -
Sto6g3531 466 MobiDBLite consensus disorder prediction 147 252 - -
Sto6g3531 466 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 108 432 IPR039605 GO:0003680
Sto6g3531 466 MobiDBLite consensus disorder prediction 440 466 - -
Sto6g3531 466 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Sto6g3531 466 SMART AT_hook_2 191 203 IPR017956 GO:0003677
Sto6g3531 466 MobiDBLite consensus disorder prediction 211 234 - -
Sto6g3531 466 MobiDBLite consensus disorder prediction 91 113 - -
Sto6g3531 466 PANTHER PPC DOMAIN-CONTAINING PROTEIN-RELATED 108 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3531 Sto-Chr6 40822695 40827070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3531 172 413 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 53.957 2.73e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3531 - - zju:107430497 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3531 6 40822695 40827070 Sto11g1812 11 16869413 16873963 CCT