Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3527 ATGAAGGTTTCTTCTTTAACTCTCAAGAGGATAATACCGAtgCTTTTCCATGTGAAGGAGCTTAGGCTTCTTTGCTTCTGCACCCTCCTCAGGGGAAGCTCGTCACTTGCAGGGAACAGTGAAAATGGGAGGAAGACTTATATTGTGTTTCTGGGCGTAGTGTTTGGAAGAAAAagatcatctttttttttaggCCTTATAATGCCAGTTCCACTTGCCCCCTACCCGACTCCCCTACCTCCATATCCTCCTCCACCGAATGGTGGACAGAGTCAGCTTGTGTGTTCAGGGTGTAGAAACCTTCTATTGTATCCTGTTGGAGCCACTTCTGTTTGCTGCGCTGTTTGCAATGCGGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAATTGGTATGTGGAGGCTGCCACACTTTACTCATGTACATCCGTGGAGCCACAAGCGTTCAATGCTCTTGCTGTCACACCGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCGCATGTGAACTGTGGGAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTGAAATGCGCTGTTTGCAATTTCGTGACATCAGTTGGGGTGTTAGCAAGCACGACTGAGCAGAAGTTCAGCACATAA 639 0.4695 MKVSSLTLKRIIPMLFHVKELRLLCFCTLLRGSSSLAGNSENGRKTYIVFLGVVFGRKRSSFFLGLIMPVPLAPYPTPLPPYPPPPNGGQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVLASTTEQKFST 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3527 212 PANTHER PROTEIN LSD1 68 209 IPR040319 -
Sto6g3527 212 Pfam LSD1 zinc finger 95 119 IPR005735 -
Sto6g3527 212 Pfam LSD1 zinc finger 172 196 IPR005735 -
Sto6g3527 212 Pfam LSD1 zinc finger 134 158 IPR005735 -
Sto6g3527 212 PANTHER PROTEIN LOL1 68 209 - -
Sto6g3527 212 SUPERFAMILY Multiheme cytochromes 95 193 IPR036280 -
Sto6g3527 212 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 131 160 IPR005735 -
Sto6g3527 212 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 92 122 IPR005735 -
Sto6g3527 212 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 169 199 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Sto6g3527 zf-LSD1 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3527 - - qsu:112000975 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3527 6 40801568 40803162 Sto11g1816 11 16899829 16901343 CCT