Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3526 ATGGGTTGCACAGCAAGGGAAAAGCACATCCGAGCCAATCGGAAATCTCGGTCAGTCAAACCCGATACAGATTTGTGCTGTCTAGAGAGATTTTCAATCTCCAAATCTGTACTGGAATCAGGCATGATGCCGTTGAAATACCATGTGGGTCTGAATGATtcaactcaaaacccaaatcctaattcaaaccctaaccttaacccTACACCTAATGTCGACGAAAGTGGATGGGGTTATTGTACAGAAGAACAATTGGAGGAAATTCTATTGAAAAACATGGAATTTTTATACAATGAAGCTGTCGCAAAGCTTGTTGCATTGGGGTATGAGGAGGACGTTGCGTTTAAAGCAGTATTGCGAAATGGGCATTGTTATGGTGGCATGGATGTGTTAACAAATATTATCCACAACTCATTGACATACTTAAATAGTAATGGTTCTGGGGGTGGTAGTACTAGTAATGACAATATGGATGAGTCAGAGCCTGTGTTCTCAGACTTGAGGCAGTTGGAGGAGTACTCTCTAGCGGGCATGGTCTGTCTTTTGCAGCATGTAAGGCCACATTTGAGTAAAGGTGATGCCATGTGGTGTTTACTTATGAGTGATCTTCATGTAGGAAGGGCAAACACTATAGAAATCCCAGTGCTTCCTGCGCCAGGTGATGGTAGTCCTGGTTCCACCACAGTTGAGACCGTTAGCAATTCAGCTGGTGTTATGGCCCCAGCTCTATGTAGGTTTCATGGGGGTCGGGGATTTGCAAATGTTGGAGGCTCAGATTTCCCTGCCAAAGAATTATTCTCGTATGCTGCAAACAAGACTTTACAAAGAGATATTGAATTCCCCAAAAGGTTTAATTTTCCTCCTTCTATGAAATCCTTATTGACAAGAAATGTAGCAGTGTTTGCTGCCGGTCTAAGGGCAAACACTAAACAATTGCAGGCACAAGCCAAAGTATGTCACAGCAATAGCACTTTGTCAAGTTTGGATTCTCCTGCTGTACTAGGGACTGAAATTCCAGTTGAGCATTCTGGGGTTTCTCAGAATCAGAATAGCCAAGATGTGAATTCAGTGTTGAGTAAATTTCGTGATCTAAATCTTGATGAAAATTTGGAGTCTGTGGCAGAAGATCAGAAGGATAGGGTGATTTTCACTCTATTTCATCAGATTAAGGATCTCGAGAAACAAGTAAAGGAGCGAAAAGAATGGGCCAATCTTAAGGCAATTCAAGCTGCAAGAAAGCTAAGCAATGATCTCACTGAGATGAAAATGCTAAGGATGGAAAGGGAAGAAACTCAGAGATTGAAGAAAGGGAAACAGGCCCTTGAGGACACCACCATGAAAAGGCTCTCAGAGATGGAGAATGCCTTGAGAAAGGCTAGTGGTCAAGTGGACCGGGCCAATGCAGCAGTGAGAAGACTTGAGACTGAAAATGCTGAAATCAAGGCAGAGATGGAGGCTTCTAAATTGAGTGCATCAGAGTCAGTCACAACTTGCTTGCAGGTTGCCAAAAGGGAGAAAAAGTGCTTGAAGAGGCTTCTAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCAGGAGATTTCAGATGTAAAAGATAAGATATTGGAGATACAAGAACTATTGGTTCGGACAAAACAATGTCAAAAAGATGCTGAGATCAAGTGGAGGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAACAGCAGCCGAGGAGGAAAGGCTCTCTAAGGAGGAAACTGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGCTTAAAGATAGAGATAGATTTCCAGCGCCATAAGGATGATGTCCTAAGACTTGAACAGGAGCTCTCACGCCTGAAAGCTTCTACTCAGCCTGCTGACTTGCATCACCAATCAAATACTTCACCTGCTAGTGAGTCTGATGGTGCAAAGGTCCAAAGAGACACAATTGCAAAGCTGCTTCAAGAATTAGATAAGGTGGATGATTCTTCCGAGAAAGAAGGCAACCGTGACAGGGAATGCGTCATATGTATGAAAGATGAAGTGTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATATGTGCTAATTGCAGCCATGAGTATGGGAGAAATGGCAAAGCTGCTTGTCCTTGCTGCCACGTTTCAATCCAACAGATGATCCGTGTATTTGGGGCAAGTTCGTAG 2172 0.4254 MGCTAREKHIRANRKSRSVKPDTDLCCLERFSISKSVLESGMMPLKYHVGLNDSTQNPNPNSNPNLNPTPNVDESGWGYCTEEQLEEILLKNMEFLYNEAVAKLVALGYEEDVAFKAVLRNGHCYGGMDVLTNIIHNSLTYLNSNGSGGGSTSNDNMDESEPVFSDLRQLEEYSLAGMVCLLQHVRPHLSKGDAMWCLLMSDLHVGRANTIEIPVLPAPGDGSPGSTTVETVSNSAGVMAPALCRFHGGRGFANVGGSDFPAKELFSYAANKTLQRDIEFPKRFNFPPSMKSLLTRNVAVFAAGLRANTKQLQAQAKVCHSNSTLSSLDSPAVLGTEIPVEHSGVSQNQNSQDVNSVLSKFRDLNLDENLESVAEDQKDRVIFTLFHQIKDLEKQVKERKEWANLKAIQAARKLSNDLTEMKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKCLKRLLAWEKQKAQLQQEISDVKDKILEIQELLVRTKQCQKDAEIKWREELKAKEEALTAAEEERLSKEETEANNKRKLEALRLKIEIDFQRHKDDVLRLEQELSRLKASTQPADLHHQSNTSPASESDGAKVQRDTIAKLLQELDKVDDSSEKEGNRDRECVICMKDEVSIVFLPCAHQVICANCSHEYGRNGKAACPCCHVSIQQMIRVFGASS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3526 723 Coils Coil 449 490 - -
Sto6g3526 723 MobiDBLite consensus disorder prediction 616 637 - -
Sto6g3526 723 Coils Coil 597 617 - -
Sto6g3526 723 SUPERFAMILY RING/U-box 668 715 - -
Sto6g3526 723 MobiDBLite consensus disorder prediction 616 639 - -
Sto6g3526 723 Pfam Zinc finger, C3HC4 type (RING finger) 666 715 - -
Sto6g3526 723 Pfam Family of unknown function (DUF6592) 92 208 IPR046527 -
Sto6g3526 723 Coils Coil 505 539 - -
Sto6g3526 723 MobiDBLite consensus disorder prediction 50 74 - -
Sto6g3526 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 720 IPR013083 -
Sto6g3526 723 MobiDBLite consensus disorder prediction 49 75 - -
Sto6g3526 723 PANTHER OS05G0141500 PROTEIN 1 722 IPR046934 -
Sto6g3526 723 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 722 - -
Sto6g3526 723 ProSiteProfiles Zinc finger RING-type profile. 669 709 IPR001841 -
Sto6g3526 723 Coils Coil 551 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3526 Sto-Chr6 40793940 40796912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3526 640 719 C3H Transcription Factor Family AT1G62370 33.750 9.68e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3526 - - gmx:100797917 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3526 6 40793940 40796912 Sto11g1822 11 16935643 16938631 CCT