Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3500 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAACGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCACTTCTGCTGCCGATATAAGAGCAAAGCTTGAGGCCATGGACTATGTTGATGCTCTGGATATAGTTCTTGGAAATTTTGTGGTATCGGATTTTAGTGGAATTGGAGTTTCTATCTTCTGCAATGAGAATGAAGCCTTGTCGGCAATGTCGAGTAGACCTGAAGGCTTCCACGTGGCCATTGTGGAGGTTAGTACTAGCGATAGCGAGGGGTGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTCAGCACCATGATGAAGTGCATAGCACTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGATAAGCTCAGGAACATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGAGCAAATGTCCTGTCCGAATCACTAAAACCCGTCAAAGAATCTGTAGTATCAATGTTGCAGCTCCAAACAGACGATAGGGAACATGGAAGTAAAATCTCCATAGATTTAGAAACAGTATCTAGGTTTAGTGATAATGACCATGAACACTCATCTGGAAGTGATAATAAATACCCAGCTCCTTCAACTCCGCAATTAAAACAGGGTGCTAGATTACTGGATGATGGAGATTGCCAAGAACAGGCTCATTGCTTGAATGAAAAGGAAATTGGAGAACATGACGGGGAATCTAAATCAGTCGAAACTACATGTGAGAATTTGAATTCTGAAGATACTACTGCTCAACCAAGGGAATCTGAAAAGAATCTGATCAAGAAGGAAGATGAAATTGCCAATGGTACTAAGAGTGAGAGTGACAATTCTCAACATCTGCATGATGGAGAACTTGTCAATAACATTGATGATAATACTACATCTCCAAAGAAAGCAGTTGTTCTCAGCGATAGATGTGAGGCCAAAGCTAACAGGAAGaactcaaagaaaatgaagGTAGACTGGACACCTGAGCTGCACAAAAAATTTGTGCAAGCAGTGGAGAAACTAGGTGTTGATCAAGCCATACCTTCTCGAATACTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATGTCTTGCCCAAGGAAGAAGATCCAAGATGGGCGCATCAAAGAGATACAATGCAAAGGAGCTATTATGCACCAAGACCAGTCATGGCCATCCCTGCATATCATTCTAATCATACCCTATCATCTCCAACACCTATGTATCCTATGTGGGGCCAATCCGGAAGTCAAACGGTCGGTGTACAGATGTGGGCCCCACCTGATTATCGCCTGTGGCAGCCTACAGATCAAAGCTGGCATAGCTGGAAGCCTTTGCCAGGGGTTCATGCAGAAGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGGTCCTTGTTTTTCCTACCCTCAACATATGCCTGGATTGAACTATGCCAATAAAGCTGACTATAGCTCTAGCATGCCACCAAGTTCCATAGAGCATCATCTGGCAGATGAAGTTGTGGACAAGGTTGTGAAGGAGGCAATAAACAAGCCATGGCTACCATTGCCCTTAGGCCTCAAACCTCCTTCCACAGATAGTCATCACCCAGCACTGGCCACTGTGTCCGTGTCTGTCTGTCCCACCACCACAGCTGGCTGGTACGAGGAGAAACTTCATTTAGTATTTACACAAACACACGAGTTGGAGAATTGGGGACCAGTTTCCCTTATCTGGTCCCTTCGCCAACCACCGACCACTGTGAGacaaaacaaaacaaatgagCTTGGTGCTCGATTGCAGTGGGAGACAGCCATAGTGCAACATGAGTGGCTCAGAATTGGCCACGTACGTGCTCAGATACTTCCGCCATCTAAGCCCAGAGGAAAAGGTGTCCCCGCGTTGGACAGGGATAGGTAG 1998 0.4479 MVCTANDLQGWNDFPKGLRVLLLDGDTTSAADIRAKLEAMDYVDALDIVLGNFVVSDFSGIGVSIFCNENEALSAMSSRPEGFHVAIVEVSTSDSEGCFKFLENAKDLPTIMTSNNHCLSTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGANVLSESLKPVKESVVSMLQLQTDDREHGSKISIDLETVSRFSDNDHEHSSGSDNKYPAPSTPQLKQGARLLDDGDCQEQAHCLNEKEIGEHDGESKSVETTCENLNSEDTTAQPRESEKNLIKKEDEIANGTKSESDNSQHLHDGELVNNIDDNTTSPKKAVVLSDRCEAKANRKNSKKMKVDWTPELHKKFVQAVEKLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHVLPKEEDPRWAHQRDTMQRSYYAPRPVMAIPAYHSNHTLSSPTPMYPMWGQSGSQTVGVQMWAPPDYRLWQPTDQSWHSWKPLPGVHAEAWGCPVLPPPQGPCFSYPQHMPGLNYANKADYSSSMPPSSIEHHLADEVVDKVVKEAINKPWLPLPLGLKPPSTDSHHPALATVSVSVCPTTTAGWYEEKLHLVFTQTHELENWGPVSLIWSLRQPPTTVRQNKTNELGARLQWETAIVQHEWLRIGHVRAQILPPSKPRGKGVPALDRDR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3500 665 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 394 IPR017930 -
Sto6g3500 665 MobiDBLite consensus disorder prediction 243 317 - -
Sto6g3500 665 Gene3D - 335 396 - -
Sto6g3500 665 SUPERFAMILY Homeodomain-like 337 395 IPR009057 -
Sto6g3500 665 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 338 393 IPR006447 GO:0003677
Sto6g3500 665 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 565 IPR044825 GO:0003700|GO:0045893
Sto6g3500 665 MobiDBLite consensus disorder prediction 271 307 - -
Sto6g3500 665 Gene3D - 18 161 - -
Sto6g3500 665 SUPERFAMILY CheY-like 59 153 IPR011006 -
Sto6g3500 665 ProSiteProfiles Response regulatory domain profile. 19 151 IPR001789 GO:0000160
Sto6g3500 665 MobiDBLite consensus disorder prediction 243 257 - -
Sto6g3500 665 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 565 - -
Sto6g3500 665 MobiDBLite consensus disorder prediction 201 225 - -
Sto6g3500 665 Pfam Myb-like DNA-binding domain 341 390 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3500 Sto-Chr6 40613109 40618073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3500 1 543 Response Regulator Gene Family AT4G18020 45.724 6.45e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto6g3500 Myb_DNA-binding 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3500 - - gmx:100784905 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3500 6 40613109 40618073 Sto11g1843 11 17156772 17162147 CCT