Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3477 ATGGCTGTTCAAGCTCAATACCCATCCAATGTCCTCCTTCTCAACAGCAGAAACGGGCAGGAAGGACATGACTACTCTTTACAACCACAACCAGGAGGAGGACTTCTTGATGAGTCCCATATCTTATACGCCAATGGAGCTACCAATTCTCGCAAGAGAGGAAGAGAAGCTACAGCAACAACCACCGGCATCGCCCAAACACCCCCTAATGTTGTTACTCCCTTCTCTATGCAACTTCAtaaccaacaacaacaacaaaatggCGTATCCACCGGTCTCCGATTATCCTTCGGTGAccaccaacaacaacaacaaagacTCCAATTACAGCAGCAACGCCAAGGCTCTCAATCTCAACCCTATGCTTTCTTATCTCTATTATCAGAAGGATTTGCCTCCCAAATCAAACAACAGCGTCACGAAATTGACCAGTTCCTTCAGGCCCAGGGAGAGCAATTGCGACGAGCGTTAGCGGAGAAAAGGCAGAGACATTATCGCGCACTACTAAGCGCGGCGGAGGAATCGGTGGGGCGGCGATTGAGAGAGAAGGAGGCGGAGGTGCAAAAAGCAGCGCGCAGGAACGCGGAGTTAGAGGCACGCGCGGCGCAACTTAGCGTGGAGGCGCAGGTTTGGCAGGCGAAGGCGAAGGCACAGGAGGCCACGGCGGCGTCTCTGCAAGCGCAACTACAGCAGGCTATAATGAGCTGTGCGCAGGAAAAGGGGGGAGGAGGTTGTTACGCGGAGGAGGCAGAGGATGCTGAGTCAGCGTACGTTGACCCGGAGCGAGTGGTGATGTCGGGACCCAAATGCAGAGGTTGTGGGAAGCGAGTGGCTTCGGTGGTAGTGTTGCCGTGTCGGCACCTATGCATCTGTACGGAATGCGACGCGCATTTCCGAGCGTGTCCCGTCTGCCTCACCATCAAAAATTCAACCGTTGAAGTCTATCTATCTTAG 954 0.5136 MAVQAQYPSNVLLLNSRNGQEGHDYSLQPQPGGGLLDESHILYANGATNSRKRGREATATTTGIAQTPPNVVTPFSMQLHNQQQQQNGVSTGLRLSFGDHQQQQQRLQLQQQRQGSQSQPYAFLSLLSEGFASQIKQQRHEIDQFLQAQGEQLRRALAEKRQRHYRALLSAAEESVGRRLREKEAEVQKAARRNAELEARAAQLSVEAQVWQAKAKAQEATAASLQAQLQQAIMSCAQEKGGGGCYAEEAEDAESAYVDPERVVMSGPKCRGCGKRVASVVVLPCRHLCICTECDAHFRACPVCLTIKNSTVEVYLS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3477 317 Pfam Zinc finger, C3HC4 type (RING finger) 269 305 - -
Sto6g3477 317 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 316 - -
Sto6g3477 317 PIRSF SBP1_RNase_bind 1 317 IPR017066 -
Sto6g3477 317 Coils Coil 180 228 - -
Sto6g3477 317 MobiDBLite consensus disorder prediction 46 70 - -
Sto6g3477 317 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 316 IPR017066 -
Sto6g3477 317 ProSiteProfiles Zinc finger RING-type profile. 270 304 IPR001841 -
Sto6g3477 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3477 Sto-Chr6 40404832 40406135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3477 270 306 Miscellaneous Gene Families AT2G21380 37.838 5.78e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3477 6 40404832 40406135 Sto11g1856 11 17306111 17307337 CCT