Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3451 ATGGCTAATCCATCTTCCTCAGCTCGATCATCCGATTCCGGGCAATTCACATACTCGGACGCCTCCTACTTCCCCATGCCTTTCCATCTTCAGCAACCAGCATCCACGTCGTCGTCTCACTCGCCTCCGGCCGCAGTGCCCGCCGTTTACTCTTACCCGCAGTACCAGCAGGCGCAGCAGCTATTTCAACGGGATGCACAGACCATCACCCCCGAAGCTCTGGAGAATGTCAAAGCGGCCATCGCCAACAGCGAGATCGAGCACAAAGCAGAGACTAAAAAGAAAGCGATTCCTCGCAAAGCGGCTGGGCAATCATGGGAGGATCCTTCGCTGGCAGAGTGGCCAGAGAATGATCATAGGCTGTTTTGTGGTGATCTTGGTAATGAGGTGAACGATGATGTTCTTTCCAAAGCTTTTTCGCGATTTCCTTCGTTTAACATGGCCAGAGTTGTCAGGGATAAGCGGAGTGGAAAAACAAAAGGATATGGATTTGTCAGTTTCGCGGATCCTTCTGACCTTGCTGTTGCTCTTAAAGAGATGAATGGGAAATATGTGGGAAATAGGCCAATCAAACTGTGCAAAAGTAAGTGGAAGGAGAGAACTGATTTTGAAGCTCTGGATAAACACAAGAAACAGTCTCGGAAGAAACCCAAACCTTCAAGGTTGGGTGTATTACATTACTGA 684 0.4898 MANPSSSARSSDSGQFTYSDASYFPMPFHLQQPASTSSSHSPPAAVPAVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDFEALDKHKKQSRKKPKPSRLGVLHY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3451 227 MobiDBLite consensus disorder prediction 91 110 - -
Sto6g3451 227 MobiDBLite consensus disorder prediction 204 227 - -
Sto6g3451 227 SMART rrm1_1 120 193 IPR000504 GO:0003723
Sto6g3451 227 MobiDBLite consensus disorder prediction 211 227 - -
Sto6g3451 227 Gene3D - 54 193 IPR012677 -
Sto6g3451 227 SUPERFAMILY RNA-binding domain, RBD 102 199 IPR035979 GO:0003676
Sto6g3451 227 Coils Coil 74 94 - -
Sto6g3451 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Sto6g3451 227 PANTHER RNA-BINDING PROTEIN 42-LIKE 30 226 - -
Sto6g3451 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Sto6g3451 227 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 226 - -
Sto6g3451 227 CDD RRM_RBM42 113 195 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3451 Sto-Chr6 40226183 40226902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3451 121 214 Eukaryotic Initiation Factors Gene Family AT1G71770 30.851 1.61e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3451 K25079 - bvg:104907755 318.931