Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3448 TTGCAGGCTTCATCTGACAGGATAACTGTGCTAGGTCTGATGGCTGAATCTGAATGTCCTTGGAGGAACGGTAAAGGTAAAGGTTCTTCCAAATTAAATGTAACTGGTGgtacaaaaaaaatcaagggAAAGAAAAGCGATTTTTTCACACGGCTTGATAAATCTAAAGTAGCTACCAAGACTAAAGTCCCGCCAAATTACTCTGGGAAGAAGcccataaaaaaggaaaaaggaagctGTGCTTCTGAGGGTATGGGTCAACTAGTAGTTTGGGAAGAGAACGATCCTGGTGACTCTAATAATGATTTGGAAGAGTTTACTGTTGTCCCAAGATCACGTGATTACAATGTTAACGTTCCTCCTATTCGTCACAGTAATCCGAGTGGTCATGACAACGACTCAAATGTGACCCGGACTAAAGTGAAGGAGACATTGCGTCTGTTTCAAACTGTTTCTAGAAAACTTCTGCAGGAGGAAGAAGCAAAGTTAAAAGATCGATCAACCACTTATAGGAGGATTGATTTACAAGCAGCTAAGATTATTAAGGAGAAAGGGAAATTAGTTAACACAGGGAAGCAGATCCTGGGACCAGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTATAGGGTGGAGCTTAATATAATTGGCCTGCATCGCCAGATTCAGGGTGGCATAGATTATGTGGTGCATAACGGTAAGATCCTTGCAACTAGTGTGGTTTCATCTGGGGGCTATGCCGACGAGTTGGATAATTCAGATGTCTTGATATATACAGGGCAGGGGGGCAGTatgttaaaaaatgataaagaaCCTGAAGATCAGAAGCTTGAGAGGGGCAATCTTGCTCTGAAGAATAGTATTGTGGAAAAGAATCCTGTTAGGGTGATACGAGGTACCGAGTCAGCGGATGGAAAGTGCAAGAGATATGTTTATGATGGGCTGTATGAAGTTGAGGCATATTGGCAGGATATGGGGCCACATGGTAAGCTGGTATTTAGGTTCCGGCTGCGAAGAAACGAGAATCAACCAGAACTTGCTTGGAAAAAAGTGAAGGAAagcaaaaaattcaaaataagagAGGGTCTATGTGTTGAAGATATTTCTGGTGGGAAAGAGTTAATTCCGATTTGTGCTGTGAACACCATAGATGATGAAAAACCCCCACCATTTCAATACACAACTAAATTGATATATCCTAATTGGTGCAATCCCATTCCTCCAGAGGGCTGTAGTTGTACTAATGGATGCTCTGACTCGGAGAAATGTTCTTGTGCAGTCAGAAATGGAGGCGAGATCCCATATAATCACAATGGGGCCATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGCCCTTCATGCAGATGTCCTCCAACTTGTCATAACAGAGTCAGCCAACGTGGCATTACAGTTCAACTTGAACTTTTTAAAACCGAGACAAGAGGATGGGGCGTGAGATCCCTGAATTCGATCCCTTCAGGAAGTTTTATATGTGAATATATAGGAGAGCTTCTTGAAGAGAAGGAAGCAGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGGAATAACTACAACAATGTTCTTTGGGATGAACTTTCGACCGATGCACATTCAAGTCCTTGTGAAATTTTGGAGAATGGTGGGTTCACCATTGATGCTGCACAGTATGGTAATGTTGGGAGATTTATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAACGTTCTTTATGATCACGAGGACAAGAGGATACCTCACATAATGCTCTTTGCTGTTGAGAACATTCCTCCCTTGCAAGAGCTGACTTATGATTACAATTATATGATAGATCAAGTCCGTGATTCTGAGGGTAATATAAAGAGGAAGGAATGCTTTTGTGGTTCTGTGGATTGTTCTGGTAGGATGTATTGA 1926 0.4045 LQASSDRITVLGLMAESECPWRNGKGKGSSKLNVTGGTKKIKGKKSDFFTRLDKSKVATKTKVPPNYSGKKPIKKEKGSCASEGMGQLVVWEENDPGDSNNDLEEFTVVPRSRDYNVNVPPIRHSNPSGHDNDSNVTRTKVKETLRLFQTVSRKLLQEEEAKLKDRSTTYRRIDLQAAKIIKEKGKLVNTGKQILGPVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYVVHNGKILATSVVSSGGYADELDNSDVLIYTGQGGSMLKNDKEPEDQKLERGNLALKNSIVEKNPVRVIRGTESADGKCKRYVYDGLYEVEAYWQDMGPHGKLVFRFRLRRNENQPELAWKKVKESKKFKIREGLCVEDISGGKELIPICAVNTIDDEKPPPFQYTTKLIYPNWCNPIPPEGCSCTNGCSDSEKCSCAVRNGGEIPYNHNGAIVEAKPLVYECGPSCRCPPTCHNRVSQRGITVQLELFKTETRGWGVRSLNSIPSGSFICEYIGELLEEKEAEQRTGNDEYLFDIGNNYNNVLWDELSTDAHSSPCEILENGGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHEDKRIPHIMLFAVENIPPLQELTYDYNYMIDQVRDSEGNIKRKECFCGSVDCSGRMY 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3448 641 Pfam Pre-SET motif 369 464 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto6g3448 641 ProSiteProfiles SET domain profile. 472 611 IPR001214 GO:0005515
Sto6g3448 641 SUPERFAMILY SET domain 354 612 IPR046341 -
Sto6g3448 641 CDD SET_AtSUVH-like 389 612 - -
Sto6g3448 641 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 88 640 - -
Sto6g3448 641 MobiDBLite consensus disorder prediction 19 40 - -
Sto6g3448 641 Pfam SET domain 483 611 IPR001214 GO:0005515
Sto6g3448 641 SMART G9a_1 191 343 IPR003105 -
Sto6g3448 641 MobiDBLite consensus disorder prediction 60 79 - -
Sto6g3448 641 Gene3D SET domain 360 641 IPR046341 -
Sto6g3448 641 ProSiteProfiles Pre-SET domain profile. 409 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto6g3448 641 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 88 640 - -
Sto6g3448 641 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 641 IPR025794 GO:0016571
Sto6g3448 641 SMART preset_2 365 456 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto6g3448 641 ProSiteProfiles YDG domain profile. 196 339 IPR003105 -
Sto6g3448 641 Gene3D - 177 359 IPR036987 -
Sto6g3448 641 SMART set_7 472 617 IPR001214 GO:0005515
Sto6g3448 641 Pfam SAD/SRA domain 195 343 IPR003105 -
Sto6g3448 641 ProSiteProfiles Post-SET domain profile. 625 641 IPR003616 -
Sto6g3448 641 SUPERFAMILY PUA domain-like 177 352 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3448 Sto-Chr6 40209904 40211829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3448 135 638 Su(var)3-9 homologs AT5G04940 41.346 1.72e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto6g3448 SAD_SRA 1.5e-49 CL0178