Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3447 ATGTTCTGCACACCACTTTGGCGCAATGGGCCACCTGAGAAGCCAGTActatgcaatgcatgtggatcTCGATGGAGAACAAAGGGAACACTTGCAAATTATACTCCGTTACATGCGCGGGCAGAAACTGATGATTATGAGGATCAAAGGGTTTCAAGGGTAAAGAGCACATCAATAAATAAGAACAAAGAAGTGAAATTATCCAAACGAAAGCATAACCAAGATAATGTTTTAACTGGAGCGGTTGCCCCTGATTACAACCAGGGTTTCCAAAAGGTCATAGATGAAGATACAAGCAATAGATCGAGTTCAGGATCAGCTATCTCTAATTCAGAGAGCTGTGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGgtcctgcTCAGTCAATTGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTGAATCGTCCAAAGCAATCTTCTGTTGAGAAGCTCACAAAAGATCTATACACTATTCTTCATGAACAACAATCTTATTTCTCTGCATCTTCTGAGGAGGATCTACTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGTGTTCTCATTAGGCATCCAAGCTCTATAGCTCGTGAAGAAGAGTCTGAAGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCCAATTAGTGAGGCATATTCATGTTCTCGTGCCACTCCTGTGCATAATGATTACAGCGGTGTGAACTTTCCACCTCAGGGAGTTCAAAAGATCAGGAGCTCTGCTGGCCAAGGAATGCAGCAGGAGCAACTTATAAGGCAGGATGTTGTTAACTATGATGAATTCATGAGAAGCTTGACAAATGAAGAGCAGCAACAATTACTCAAGTGTCTCCCTGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAAAAGCATGTTCATTAGCCCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGTGTCTTTGATATCTCCTTATCGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAATCAAAATGGGTGGAGCACTATAATTTACTCAAGAGATGTAAAAACAAAGCTGGAAAATCTGTTGCTCTGGGATCTACTGGCACTGCATCTAGTAATGTTGCAAATGTCAAGAGATATCATGACAACCAAAATCAAAACTTTTCAGAACTGAAGACAACAACAATGAGGAGCCCCAAAAGGGTGACGGTGAAGGCCGGCTGTGACAGCAAGGAAGCTGTAGAGTATGGTTCTTGCTTCAGTCCTAAAAGCCTATTTGCTGTGCCTCCTGATGGAGACTCACTCATGCTGGATTCCTTCAATTTTGTTGAGGAGAGTTCTGATCAAGATCTGCTGCTAGAGGTGCCATCTAACAGTTCCTTTCCACAGGCAGAGCTACTACACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCGCCAGTAGTAGCTCAGTATACCCTCATCTTGTCCATCCCTGA 1524 0.4193 MFCTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSTSINKNKEVKLSKRKHNQDNVLTGAVAPDYNQGFQKVIDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVNRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPISEAYSCSRATPVHNDYSGVNFPPQGVQKIRSSAGQGMQQEQLIRQDVVNYDEFMRSLTNEEQQQLLKCLPVVDTAKFPDSLKSMFISPQFKENLTYFQQLLAEGVFDISLSGAKPEDCKTLKRLALSNLSKSKWVEHYNLLKRCKNKAGKSVALGSTGTASSNVANVKRYHDNQNQNFSELKTTTMRSPKRVTVKAGCDSKEAVEYGSCFSPKSLFAVPPDGDSLMLDSFNFVEESSDQDLLLEVPSNSSFPQAELLHPTLSFGAQASASSSSVYPHLVHP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3447 507 Pfam GATA zinc finger 4 30 IPR000679 GO:0006355|GO:0043565
Sto6g3447 507 CDD ZnF_GATA 4 42 IPR000679 GO:0006355|GO:0043565
Sto6g3447 507 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 260 373 IPR044867 -
Sto6g3447 507 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 3 271 - -
Sto6g3447 507 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 271 507 - -
Sto6g3447 507 PANTHER OSJNBB0038F03.10 PROTEIN 3 271 IPR044589 -
Sto6g3447 507 PANTHER OSJNBB0038F03.10 PROTEIN 271 507 IPR044589 -
Sto6g3447 507 SMART GATA_3 2 44 IPR000679 GO:0006355|GO:0043565
Sto6g3447 507 Gene3D - 252 351 IPR038108 -
Sto6g3447 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 34 - -
Sto6g3447 507 Gene3D - 2 76 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3447 Sto-Chr6 40199788 40204319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3447 4 484 C2C2-Gata Transcription Factor Family AT4G17570 51.451 1.96e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto6g3447 GATA 1e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3447 - - gmx:100798504 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3447 6 40199788 40204319 Sto11g1872 11 17453689 17458704 CCT